Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,172,377 – 19,172,497 |
Length | 120 |
Max. P | 0.999981 |
Location | 19,172,377 – 19,172,497 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.42 |
Mean single sequence MFE | -50.78 |
Consensus MFE | -47.72 |
Energy contribution | -46.64 |
Covariance contribution | -1.08 |
Combinations/Pair | 1.22 |
Mean z-score | -3.18 |
Structure conservation index | 0.94 |
SVM decision value | 5.28 |
SVM RNA-class probability | 0.999981 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19172377 120 + 23771897 GCAAACCAGCUUCCACUUGAUUGCUGCUUUUCCGGAUUCUGCUGGUUUUUCUUGUCUUUCCCUGCGACAGAGUCGCCGGGGAAGACAUCCGUCAGGAGUUGGCAAAUGGAAGUUGGAGCG ((...((((((((((.(((...(((.((...((((......)))).......((((((((((.(((((...))))).))))))))))......)).)))...))).)))))))))).)). ( -52.20) >DroSec_CAF1 2318 120 + 1 GCAAACCAGCUUCCACUUGAUUGCUGCUUUUCCGGAUGCUGCUGGUUUUUCUUGCCUUUCCCUGCAACAGAGUCGCCGGGGCAGUCAUCUGUCAGGAGUUGGCAAAUGGAAGCUGGAGCG ((...((((((((((.(((...(((.((....((((((((((((((..(((((((........)))..))))..)))..))))).))))))..)).)))...))).)))))))))).)). ( -49.70) >DroSim_CAF1 5261 120 + 1 GCAAACCAGCUUCCACUUGAUUGCUGCUUUUCCGGAUGCUGCUGGUUUUUCUUGCUUUUCCCUGCGACAGAGUCGCCGGGGCAGUCAUCCGUCAGGAGUUGGCAAAUGGAAGCUGGAGCG ((...((((((((((.(((...(((.((....((((((((((.(((.......)))...(((.(((((...))))).))))))).))))))..)).)))...))).)))))))))).)). ( -55.20) >DroEre_CAF1 4920 120 + 1 GCAAACCAGCUUCCACUUGAUUGCUGCUUUUCCGGAUGCCGUUGGUUUUUCUUGCCUUUCUCUGCGGCAGAGUCGCCGGGGCAGCCAUCCGUCAGGAGUUGGCAAAUGGAAGUUGGAGCG ((...((((((((((.(((...((((((...((((.((((((.(((.......))).......))))))......))))))))))..(((....))).....))).)))))))))).)). ( -48.40) >DroYak_CAF1 6855 120 + 1 GCAAACCAGCUUCCACUUGAUUGCUGCUUUUCCGGAUGCUGUUGGUUUUUCUUGCCUUUCUCUGCGGCCGAGUCGGCGGGGCAGUCAUCCGUCAGGAGUUGGCAAAUGGAAGUUGGAGCG ((...((((((((((.(((...(((.((....((((((((((((((.......)))........(.((((...)))).)))))).))))))..)).)))...))).)))))))))).)). ( -48.40) >consensus GCAAACCAGCUUCCACUUGAUUGCUGCUUUUCCGGAUGCUGCUGGUUUUUCUUGCCUUUCCCUGCGACAGAGUCGCCGGGGCAGUCAUCCGUCAGGAGUUGGCAAAUGGAAGUUGGAGCG ((...((((((((((.(((...(((.((....((((((((((.(((.......)))...(((.(((((...))))).)))))))).)))))..)).)))...))).)))))))))).)). (-47.72 = -46.64 + -1.08)
Location | 19,172,377 – 19,172,497 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.42 |
Mean single sequence MFE | -44.96 |
Consensus MFE | -34.16 |
Energy contribution | -35.84 |
Covariance contribution | 1.68 |
Combinations/Pair | 1.05 |
Mean z-score | -3.28 |
Structure conservation index | 0.76 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.963065 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19172377 120 - 23771897 CGCUCCAACUUCCAUUUGCCAACUCCUGACGGAUGUCUUCCCCGGCGACUCUGUCGCAGGGAAAGACAAGAAAAACCAGCAGAAUCCGGAAAAGCAGCAAUCAAGUGGAAGCUGGUUUGC .((.(((.((((((((((....((.((..((((((((((.(((.(((((...))))).))).)))))..(......)......)))))....)).))....)))))))))).)))...)) ( -44.00) >DroSec_CAF1 2318 120 - 1 CGCUCCAGCUUCCAUUUGCCAACUCCUGACAGAUGACUGCCCCGGCGACUCUGUUGCAGGGAAAGGCAAGAAAAACCAGCAGCAUCCGGAAAAGCAGCAAUCAAGUGGAAGCUGGUUUGC .((.((((((((((((((....((.((..(.((((.(((((((.(((((...))))).)))...((.........)).)))))))).)....)).))....))))))))))))))...)) ( -47.30) >DroSim_CAF1 5261 120 - 1 CGCUCCAGCUUCCAUUUGCCAACUCCUGACGGAUGACUGCCCCGGCGACUCUGUCGCAGGGAAAAGCAAGAAAAACCAGCAGCAUCCGGAAAAGCAGCAAUCAAGUGGAAGCUGGUUUGC .((.((((((((((((((....((.((..((((((.(((((((.(((((...))))).)))........(......).))))))))))....)).))....))))))))))))))...)) ( -53.60) >DroEre_CAF1 4920 120 - 1 CGCUCCAACUUCCAUUUGCCAACUCCUGACGGAUGGCUGCCCCGGCGACUCUGCCGCAGAGAAAGGCAAGAAAAACCAACGGCAUCCGGAAAAGCAGCAAUCAAGUGGAAGCUGGUUUGC .((.(((.((((((((((....((.((..((((((.((((....)))..((((((.........))).))).........).))))))....)).))....)))))))))).)))...)) ( -40.30) >DroYak_CAF1 6855 120 - 1 CGCUCCAACUUCCAUUUGCCAACUCCUGACGGAUGACUGCCCCGCCGACUCGGCCGCAGAGAAAGGCAAGAAAAACCAACAGCAUCCGGAAAAGCAGCAAUCAAGUGGAAGCUGGUUUGC .((.(((.((((((((((....((.((..((((((.((((...((((...)))).)))).....((.........)).....))))))....)).))....)))))))))).)))...)) ( -39.60) >consensus CGCUCCAACUUCCAUUUGCCAACUCCUGACGGAUGACUGCCCCGGCGACUCUGUCGCAGGGAAAGGCAAGAAAAACCAGCAGCAUCCGGAAAAGCAGCAAUCAAGUGGAAGCUGGUUUGC .((.(((.((((((((((....((.((..((((((.(((((((.(((((...))))).)))........(......).))))))))))....)).))....)))))))))).)))...)) (-34.16 = -35.84 + 1.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:29 2006