| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,171,701 – 19,171,820 |
| Length | 119 |
| Max. P | 0.934219 |
| Location | 19,171,701 – 19,171,820 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.36 |
| Mean single sequence MFE | -32.60 |
| Consensus MFE | -27.78 |
| Energy contribution | -29.22 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.85 |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.934219 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19171701 119 + 23771897 AUGAGGCGCAUUUGUGUUCGGAAUUUAUAAUUUGGGGGUGGAGCU-GCUGCCUCUCGCACUUCUGUGGGCCUUAAAUGUAAUUGAGUAAUUAACAUAAAUUAUAAUACAUAAUUUGCGCU ....((((((.((((((....(((((((.(((((((((..(....-.)..)).((((((....)))))).)))))))....((((....)))).))))))).....))))))..)))))) ( -31.50) >DroSec_CAF1 1582 118 + 1 AUGAGGCGCAUUUGUGUUCGGAAUUUAUAAU-UGGGGGUGGAGCU-CCUGCCUCUCGCACUUCUGUGGGGCUCAAAUGUAAUUGAGUAAUUAACAUAAAUUAUAAUACAUAAUUUGCGCU ....((((((.((((((....(((((((...-.(((((..(....-.)..)))))(.(((....))).)((((((......)))))).......))))))).....))))))..)))))) ( -35.70) >DroSim_CAF1 4510 119 + 1 AUGAGGCGCAUUUGUGUUCGGAAUUUAUAAU-UGGGGGUGGAGCUGCCUGCCUCUCGCACUUCUGUGGGGCUCAAAUGUAAUUGAGUAAUUAACAUAAAUUAUAAUACAUAAUUUGCGCU ....((((((.((((((....(((((((...-.(((((..(......)..)))))(.(((....))).)((((((......)))))).......))))))).....))))))..)))))) ( -35.90) >DroEre_CAF1 4133 115 + 1 AUGUGGCGCAUUUGUGUUCGGAAUUUAUAAU-UGGGG--GGAGCU-GCUGCCUCUCGCGCUUCUG-GGGGCUCAAAUGUAAUUGAGUAAUUAACAUAAAUUAUAAUACAUAAUUUGCACU ....((.(((.((((((....(((((((...-.(.((--(..((.-...))..))).).....((-(..((((((......))))))..)))..))))))).....))))))..))).)) ( -26.80) >DroYak_CAF1 6110 116 + 1 AUGUGGCGCAUUUGUGUUCGGAAUUUAUAAU-UGGGG-AGGAGCU-GCUGCCUCUCGCACUUCUG-GGGGCUCAAAUGUAAUUGAGUAAUUAACAUAAAUUAUAAUACAUAAUUUGCGCU ....((((((.((((((....(((((((...-..(.(-((..((.-...))..))).).....((-(..((((((......))))))..)))..))))))).....))))))..)))))) ( -33.10) >consensus AUGAGGCGCAUUUGUGUUCGGAAUUUAUAAU_UGGGGGUGGAGCU_GCUGCCUCUCGCACUUCUGUGGGGCUCAAAUGUAAUUGAGUAAUUAACAUAAAUUAUAAUACAUAAUUUGCGCU ....((((((.((((((....(((((((.....((((((((......))))))))(.(((....))).)((((((......)))))).......))))))).....))))))..)))))) (-27.78 = -29.22 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:27 2006