Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,169,191 – 19,169,311 |
Length | 120 |
Max. P | 0.525792 |
Location | 19,169,191 – 19,169,311 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.25 |
Mean single sequence MFE | -30.70 |
Consensus MFE | -27.46 |
Energy contribution | -27.52 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.03 |
Mean z-score | -1.56 |
Structure conservation index | 0.89 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.525792 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19169191 120 - 23771897 UCUAAUUUCAUGCUGCCUUGUUCUGAAACCCUAGAGCAGAAAAAUGAAAGCUUGUAAACAUUUUGGUCCCCAUCGUUAGUCCCUCCAUUCACUUUCGAGGCUCGGGUGAAAUUAAUAAAU ..(((((((((.(.(((((((((((......))))))........(((((..((....))....((..(.........)..))........))))))))))..).)))))))))...... ( -25.20) >DroSim_CAF1 2014 120 - 1 UCUAAUUUCAUGCUGCCUUGUUCUGAACCCCUAGAGCAGAAAAAUGAAAGCUUGUAAACAUUUUGGUCCCCAUCGGUGGGGCCUCCAUUCACUUUCGAGGCUCGGGUGAAAUUAAUAAAU ..(((((((((.(.(((((((((((......))))))........(((((..((....))....((.(((((....)))))))........))))))))))..).)))))))))...... ( -36.20) >DroEre_CAF1 1592 120 - 1 UCUAAUUUCAUGCUGCCUUGUUCUGAACCCCUAGAGCAGAAAAAUGAAAGCUUGUAAACAUUUUGGUCCCCACCGGUGGUCCCUCCAUUCACUUUCGGGGCUCGGGUGAAAUUAAUAAAU ..(((((((((.(.(((((((((((......)))))))......((((((..............(((....)))(((((.....)))))..))))))))))..).)))))))))...... ( -30.60) >DroYak_CAF1 3493 120 - 1 UCUAAUUUCAUGCUGCCUUGUUCUGAGCCCCUAGAGCAGAAAAAUGAAAGCUUGUAAACAUUUUGGUCCCCAUCGGUGGUCCCUCCAUUCACUUUCGAGGCUUGGGUGAAAUUAAUAAAU ..(((((((((.(.(((((((((((......))))))........(((((..((....))....((.((((...)).)).)).........))))))))))..).)))))))))...... ( -30.80) >consensus UCUAAUUUCAUGCUGCCUUGUUCUGAACCCCUAGAGCAGAAAAAUGAAAGCUUGUAAACAUUUUGGUCCCCAUCGGUGGUCCCUCCAUUCACUUUCGAGGCUCGGGUGAAAUUAAUAAAU ..(((((((((.(.(((((((((((......))))))........(((((..((....))...(((...(((....))).....)))....))))))))))..).)))))))))...... (-27.46 = -27.52 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:19 2006