Locus 7118

Sequence ID 3L_DroMel_CAF1
Location 19,169,034 – 19,169,151
Length 117
Max. P 0.658774
window11548

overview

Window 8

Location 19,169,034 – 19,169,151
Length 117
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 95.38
Mean single sequence MFE -29.83
Consensus MFE -27.29
Energy contribution -27.35
Covariance contribution 0.06
Combinations/Pair 1.04
Mean z-score -1.57
Structure conservation index 0.91
SVM decision value 0.26
SVM RNA-class probability 0.658774
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19169034 117 - 23771897
CUUCGCCAACUGCGAACAUUUUGCGCCAUUAAGCAAGCAACGGCUUCCUCGUGCUGCGGUACUUUUCACUUACCCUUAACCAGAGCGAGGAACCCCCAAAGAAACCGCAGAGACCCC---
.........(((((.....(((((........)))))....((.((((((((.(((.((((.........))))......))).)))))))).))..........))))).......--- ( -30.50)
>DroSim_CAF1 1858 116 - 1
CUUCACCAACUGCGAACAUUUUGCGCCAUUAAGCA-GCAACGGCUUCCUCGUGCUGCGGUACUUUUCACUUACCCUUAACCAGAGCGAGGAACCCCCAAAGAAACCGCAGAGACCCC---
.........(((((......((((((......)).-)))).((.((((((((.(((.((((.........))))......))).)))))))).))..........))))).......--- ( -30.90)
>DroEre_CAF1 1433 119 - 1
CUUCACCAACUGCGAACAUUUUGCGCCAUUAAGCA-GCAACGGCUUCCUCGUGCUGCGGUACUUUUCACUUACCCUUAACCAGAGAGAGGGACCCCCAAAGAAACCGCAGAGACCCCAAG
.........(((((....(((((.........(((-(((.(((.....)))))))))(((.((((((.((...........)).)))))).)))..)))))....))))).......... ( -28.80)
>DroYak_CAF1 3334 119 - 1
CUUCACCAACUGCGAACAUUUUGCGCCAUUAAGCA-UCAACGGAUUCCUCGUGCUGCGGUACUUUUCACUUACCCUUAACCAGAGCGAGGAACCCCUAAAGAAACCGCAGAGACCCCAAG
.........(((((.......(((........)))-.....((.((((((((.(((.((((.........))))......))).)))))))).))..........))))).......... ( -29.10)
>consensus
CUUCACCAACUGCGAACAUUUUGCGCCAUUAAGCA_GCAACGGCUUCCUCGUGCUGCGGUACUUUUCACUUACCCUUAACCAGAGCGAGGAACCCCCAAAGAAACCGCAGAGACCCC___
.........(((((.......(((........)))......((.((((((((.(((.((((.........))))......))).)))))))).))..........))))).......... (-27.29 = -27.35 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:18 2006