| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,167,854 – 19,167,973 |
| Length | 119 |
| Max. P | 0.885413 |
| Location | 19,167,854 – 19,167,973 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.78 |
| Mean single sequence MFE | -18.10 |
| Consensus MFE | -16.30 |
| Energy contribution | -16.30 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.885413 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19167854 119 - 23771897 CAUUCCUUCACUUCGCUUAGUUUUCCCACCCACACUC-GCUGUAAUUGUCGUAAACUUUUCCCGAGUAAAAAUUAACGAUCAUAAAGUAGAGCCAUGAAAAUUAUACCAGGCUCAACAGC .....................................-(((((.((.(((((.((.((((.......)))).)).))))).))......(((((.((..........))))))).))))) ( -17.10) >DroSim_CAF1 650 120 - 1 CAUCCCUUCGCUUCGCUUAGUUUUCCCACCCACACUCGGCUGUAAUUGUCGUAAACUUUUCCCCAGUAAAAAUUAACGAUCAUAAAGUAGAGCCAUGAAAAUUAUACCAGGCUCAACAGC .........((((((.((((((((............((((.......))))...(((.......))).))))))))))).......((.(((((.((..........))))))).))))) ( -18.60) >DroEre_CAF1 377 95 - 1 CACUCCCAC------------------------ACCC-GCUGUAAUUGUCAUAAACUUUUUCCCAGUAAAAAUUUACGAUCAUAAAGUAGAGCCAUGAAAAUUAUACCAGGCUCAACAGC .........------------------------....-(((((...........(((((......((((....))))......))))).(((((.((..........))))))).))))) ( -18.60) >consensus CAUUCCUUC_CUUCGCUUAGUUUUCCCACCCACACUC_GCUGUAAUUGUCGUAAACUUUUCCCCAGUAAAAAUUAACGAUCAUAAAGUAGAGCCAUGAAAAUUAUACCAGGCUCAACAGC ......................................(((((...........(((((......((........))......))))).(((((.((..........))))))).))))) (-16.30 = -16.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:12 2006