| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,166,665 – 19,166,772 |
| Length | 107 |
| Max. P | 0.650513 |
| Location | 19,166,665 – 19,166,772 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.34 |
| Mean single sequence MFE | -31.28 |
| Consensus MFE | -22.31 |
| Energy contribution | -23.00 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.650513 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19166665 107 - 23771897 AAAAGCUCAACUACAGGCCAUGUGCGAUGUUGUCCACAUAGCCAGCCGUCAUAAUUGAUGAAUUUAUGGCAUUUCUUGGAAACGA-----AACGAGCCAGAAGUCUGGGCCC-------- ....((((((((.(.(((.(((((.(((...)))))))).)))...(((((....)))))......((((.....(((....)))-----.....))))).))).)))))..-------- ( -32.30) >DroSec_CAF1 29449 107 - 1 AAAAGCUCAACUACUGGCCAUGUGCGAUGUUGUCCACAUAGCCAGCCGUCAUAAUUGAUGAAUUUAUGGCAUUUCUUGGAAACGA-----AACGAGCCAGAAGUCUGGGCCC-------- ....((((((((.(((((((((((.(((...)))))))).((((..(((((....)))))......)))).....(((....)))-----...).))))).))).)))))..-------- ( -35.40) >DroAna_CAF1 22157 119 - 1 -CAAUCCCUACUACAUGAAAUGUCCAAUGUUGUCCACAUAGCCAGCCGUCAUAAUUGAUGAAUUUAUGGCAUUUCUCGGAAAUGAAACGCAACGAGCCCGAAGUCAGGCCCCUGCUGGAC -....................(((((.((((((.......((((..(((((....)))))......)))).((((........)))).)))))).(((.(....).)))......))))) ( -25.10) >DroEre_CAF1 29961 107 - 1 AAAAGCUCAACUACAGGCAAUGUGCGACGUUGUCCACAUAGCCAGCCGUCAUAAUUGAUGAAUUUAUGGCAUUUCUGGGAAACGA-----AACGAGCCAGAAGUCUGGGCCC-------- ....(((((......(((.(((((.(((...)))))))).)))....(((((((.........)))))))((((((((.......-----......)))))))).)))))..-------- ( -32.32) >consensus AAAAGCUCAACUACAGGCAAUGUGCGAUGUUGUCCACAUAGCCAGCCGUCAUAAUUGAUGAAUUUAUGGCAUUUCUUGGAAACGA_____AACGAGCCAGAAGUCUGGGCCC________ ....((((((((.(.(((.(((((.(((...)))))))).((((..(((((....)))))......)))).....(((....)))..........))).).))).))))).......... (-22.31 = -23.00 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:08 2006