Locus 7112

Sequence ID 3L_DroMel_CAF1
Location 19,166,477 – 19,166,573
Length 96
Max. P 0.516581
window11536

overview

Window 6

Location 19,166,477 – 19,166,573
Length 96
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 98.61
Mean single sequence MFE -24.73
Consensus MFE -24.17
Energy contribution -24.50
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.40
Structure conservation index 0.98
SVM decision value -0.03
SVM RNA-class probability 0.516581
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19166477 96 - 23771897
AAACGUGCGAAUUGCUCAAUUCCUCAAUUCCAGGCAGCUCAAUUCUUGCCACGCUUGAAAAUCUUGCGCGGCGGCUUUUCAUUGACCGCAACCGAA
...(((((((((((..........))))))..(((((........)))))...............)))))(((((........).))))....... ( -23.80)
>DroSec_CAF1 29261 96 - 1
AAACGUGCGAAUUGCUCAAUUCCUCAAUUCCUGGCAGCUCAAUUCUUGCCACGCUUGAAAAUCUUGCGCGGCGGCUUUUCAUUGACCGCAACCGAA
...((((((((((....))))).((((..(.((((((........)))))).).)))).......)))))(((((........).))))....... ( -25.20)
>DroEre_CAF1 29783 96 - 1
AAACGUGCGAAUUGCUCAAUUCCUCAAUUCCUGGCAGCUCAAUUCUUGCCACGCUUGAAAAUCUUGCGCGGCGGCUUUUCAUUGACCGCAGCCGAA
...((((((((((....))))).((((..(.((((((........)))))).).)))).......)))))(((((........).))))....... ( -25.20)
>consensus
AAACGUGCGAAUUGCUCAAUUCCUCAAUUCCUGGCAGCUCAAUUCUUGCCACGCUUGAAAAUCUUGCGCGGCGGCUUUUCAUUGACCGCAACCGAA
...((((((((((....))))).((((..(.((((((........)))))).).)))).......)))))(((((........).))))....... (-24.17 = -24.50 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:06 2006