Locus 7111

Sequence ID 3L_DroMel_CAF1
Location 19,165,187 – 19,165,306
Length 119
Max. P 0.591647
window11535

overview

Window 5

Location 19,165,187 – 19,165,306
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.58
Mean single sequence MFE -29.86
Consensus MFE -23.44
Energy contribution -24.24
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.48
Structure conservation index 0.79
SVM decision value 0.12
SVM RNA-class probability 0.591647
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19165187 119 - 23771897
GUAU-AAGACAAAUAUUUUGUUACCAGUUUUUAUGCCUUGUGUCGUCGUUUGCUGUGGCUGUUGAUGACUCUUUGGACCGGCUCUUUGGUGGAGCUCCUCCACUUUGGCCCACUCCAUGC
((((-(((((((.....)))))........))))))...(.(((((((...((....))...))))))).)..((((..((((....(((((((...)))))))..))))...))))... ( -32.80)
>DroSec_CAF1 28020 119 - 1
GUAU-AAUACAAAUAUUUUGUUACCAGUUUUUAUGCCUUUUGUCGUCGUUUGCUGUGGCUGUUGAUGACUCUUUGGACCGGCUCUUUGGAGGAGCUCCUCCACUUUGGCCCACUCCAUGC
((((-((.((((.....)))).........)))))).....(((((((...((....))...)))))))....((((..((((...((((((....))))))....))))...))))... ( -32.20)
>DroAna_CAF1 20569 104 - 1
AUAUAAAUACAAAUAUUUUGUUACCAGUUUUUAUGCCUUUUGUCGUCGUUUGCUGUGGCUGUUGAUGACUCUUUGGACCGGCUCUUUA---GAGCUCCUCCACUU-----CA--------
.((((((.((................)).))))))......(((((((...((....))...)))))))....((((..(((((....---)))))..))))...-----..-------- ( -22.99)
>DroSim_CAF1 28766 119 - 1
GUAU-AAUACAAAUAUUUUGUUACCAGUUUUUAUGCCUUUUGUCGUCGUUUGCUGUGGCUGUUGAUGACUCUUUGGACCGGCUCUUUGGAGGAGCUCCUCCACUUUGGCCCACUCCAUGC
((((-((.((((.....)))).........)))))).....(((((((...((....))...)))))))....((((..((((...((((((....))))))....))))...))))... ( -32.20)
>DroEre_CAF1 28545 113 - 1
GUAU-AAUACAAAUAUUUUGUUACCAGUUUUUAUGCCUUUUGUCGUCGUUUGCUGUGGCUGUUGAUGACUCUUUGGACCGGCUCU-UGGAGGAGCUGCUCCUCUUUGGCCCACA-----C
....-.............................(((....(((((((...((....))...))))))).....(((.(((((((-....))))))).))).....))).....-----. ( -29.10)
>consensus
GUAU_AAUACAAAUAUUUUGUUACCAGUUUUUAUGCCUUUUGUCGUCGUUUGCUGUGGCUGUUGAUGACUCUUUGGACCGGCUCUUUGGAGGAGCUCCUCCACUUUGGCCCACUCCAUGC
..................................(((....(((((((...((....))...))))))).....(((..((((((.....))))))..))).....)))........... (-23.44 = -24.24 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:06 2006