Locus 7110

Sequence ID 3L_DroMel_CAF1
Location 19,163,705 – 19,163,799
Length 94
Max. P 0.525586
window11534

overview

Window 4

Location 19,163,705 – 19,163,799
Length 94
Sequences 3
Columns 94
Reading direction reverse
Mean pairwise identity 93.57
Mean single sequence MFE -33.00
Consensus MFE -29.22
Energy contribution -30.00
Covariance contribution 0.78
Combinations/Pair 1.04
Mean z-score -1.73
Structure conservation index 0.89
SVM decision value -0.02
SVM RNA-class probability 0.525586
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19163705 94 - 23771897
AUUGUCGUUUGAAACUCAAGCCUUUGGCCAACACUUUGUUGGCCGAGUGCGCAGAGUGACGUCCGGCCCGGAACCGGCUCUACGUCUAUCCGGG
...((((..((..((((..((.((((((((((.....)))))))))).))...))))..))..))))(((((...(((.....)))..))))). ( -40.00)
>DroSec_CAF1 26564 92 - 1
AUUGUCGUUUGAAACUCAAGCCUUUGGCCAACACUUUGUUGGCCGAGUG--CAGAGUGACGUCCGGCCCGGAACCGGCUCUACGUCUAUCCGGG
...((((..((..((((..((.((((((((((.....)))))))))).)--).))))..))..))))(((((...(((.....)))..))))). ( -38.80)
>DroEre_CAF1 27161 92 - 1
AUUGUUGUUUGAAACUCAAGCCUUUGGCCAACACUUUCUUGCCCGAGUA--CAGAGUGACGUCCGGCCCGGAACCAGCUCCACGUCUAUCCGGA
...((((..((..((((....(((.(((............))).)))..--..))))..))..))))(((((....((.....))...))))). ( -20.20)
>consensus
AUUGUCGUUUGAAACUCAAGCCUUUGGCCAACACUUUGUUGGCCGAGUG__CAGAGUGACGUCCGGCCCGGAACCGGCUCUACGUCUAUCCGGG
...((((..((..((((.....((((((((((.....))))))))))......))))..))..))))(((((...(((.....)))..))))). (-29.22 = -30.00 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:04 2006