Locus 711

Sequence ID 3L_DroMel_CAF1
Location 2,154,164 – 2,154,274
Length 110
Max. P 0.961995
window1088

overview

Window 8

Location 2,154,164 – 2,154,274
Length 110
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 77.66
Mean single sequence MFE -26.20
Consensus MFE -18.94
Energy contribution -20.62
Covariance contribution 1.68
Combinations/Pair 1.20
Mean z-score -2.02
Structure conservation index 0.72
SVM decision value 1.53
SVM RNA-class probability 0.961995
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2154164 110 + 23771897
AUUUCCGUACCAACGUCCAGAAAUGUGACCCCAGGGUACGGGAAUCUUCACAGCUUCGAACUGAAAGAUGCAUAAACUGUAUUAGUCACUUUUAGCAGAUGGUCACAC---AA-----
(((((((((((...(((((....)).))).....))))))))))).......(((..(((.(((..((((((.....))))))..))).))).)))............---..----- ( -31.00)
>DroSec_CAF1 205929 105 + 1
AUUUCCGUACCAACGUCCAGAAAUGUGACCCCAGGGUACAGGAAUCUUCACAGCUUCGAACUGGAAGAUGCACAAACUGUAUCAUUCACUUUUAACUAUUA-----AC---AA-----
..(((((((((...(((((....)).))).....))))).))))..(((.(((.......))))))((((((.....))))))..................-----..---..----- ( -24.20)
>DroSim_CAF1 206210 110 + 1
AUUUCCGUACCAACGUCCAGAAAUGUGACCCCAGGGUACGGGAAUCUUCACAGCUUCGAACUGGAAAAUGCACAAACUGUAUUAUUCACUUUUAACUAUUA-----AC---CUGUUGU
(((((((((((...(((((....)).))).....)))))))))))....(((((...(((.((((.((((((.....)))))).)))).))).........-----..---..))))) ( -27.69)
>DroEre_CAF1 212103 112 + 1
AUUUCCGUACCAACGUCCAGAAAUGUGACCCCAAGGCACGGGAAUCUUUACAGCUUGGAACUGCAAAGUGUAUAGACUAUAUUACUGUCUUCU------UAAUCACUCUACCAGUUAU
((((((((.((...(((((....)).))).....)).)))))))).............(((((...((((...((((.........))))...------....))))....))))).. ( -24.30)
>DroYak_CAF1 204177 112 + 1
AUUUCCGUACCAACGUCCAGAAAUGUGACCCCAUGGCACGGGAAUCUUCACGGCUUGGAACUGCAAAGUUCAUUAAAUGUAUUAAUCACUUCG------UAAUCACUCUACCAGUUAU
((((((((.(((..(((((....)).)))....))).))))))))....((((..(((((((....)))))(((((.....)))))))..)))------).................. ( -23.80)
>consensus
AUUUCCGUACCAACGUCCAGAAAUGUGACCCCAGGGUACGGGAAUCUUCACAGCUUCGAACUGCAAAAUGCAUAAACUGUAUUAUUCACUUUUA_C___UA_UCACAC___CAGUU_U
(((((((((((...(((((....)).))).....))))))))))).....(((.......)))...((((((.....))))))................................... (-18.94 = -20.62 +   1.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:10 2006