Locus 7108

Sequence ID 3L_DroMel_CAF1
Location 19,162,451 – 19,162,541
Length 90
Max. P 0.899355
window11531

overview

Window 1

Location 19,162,451 – 19,162,541
Length 90
Sequences 3
Columns 90
Reading direction reverse
Mean pairwise identity 88.93
Mean single sequence MFE -18.07
Consensus MFE -16.44
Energy contribution -16.00
Covariance contribution -0.44
Combinations/Pair 1.14
Mean z-score -2.10
Structure conservation index 0.91
SVM decision value 1.01
SVM RNA-class probability 0.899355
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19162451 90 - 23771897
GGGGGAUACGCACACAUGGUAUCUGCCCCAAGCCCCCCGCAACAUGUUCCCCAAAAAUCCCCACUCCCUGACAAUCGCUUCCAUGCCACC
((((((((.........(((....)))....((.....))....))))))))........................((......)).... ( -15.70)
>DroSec_CAF1 25455 82 - 1
GGGGGAUACGCACACAUGGCAUCUGCCCCCAAGCCCCCGCAACAUGUCCCCCAAAAAUCCCCC--------CAAUCGCUUCCAUGCCACC
((((((((.........(((....))).....((....))....))))))))...........--------.....((......)).... ( -20.80)
>DroSim_CAF1 25012 82 - 1
GGGGGAUACGCACACAUGGCAUCUGCCCCCAAACCCCCGCAACAUGUCCCCCAAAAAUCCCCC--------CAAUCGCUUCCAUGCCACC
((((((((.(....)..(((....))).................))))))))...........--------.....((......)).... ( -17.70)
>consensus
GGGGGAUACGCACACAUGGCAUCUGCCCCCAAACCCCCGCAACAUGUCCCCCAAAAAUCCCCC________CAAUCGCUUCCAUGCCACC
((((((((.(....)..(((....))).................))))))))........................((......)).... (-16.44 = -16.00 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:01 2006