Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,162,264 – 19,162,379 |
Length | 115 |
Max. P | 0.950118 |
Location | 19,162,264 – 19,162,379 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 97.22 |
Mean single sequence MFE | -22.46 |
Consensus MFE | -20.10 |
Energy contribution | -19.86 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.12 |
Mean z-score | -1.70 |
Structure conservation index | 0.89 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950118 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19162264 115 - 23771897 UCCUUUCACCCAAAUGGAAAAAUCCUCUUGGUCUGCGAAUCAGCAUCAGCUAAGCAAACAACAUUGCACUGCCAAACUGCGGAUGGGAAAAUCAGCAUGCAAAUAAAAUAAAAUA ((((.....((((..(((....)))..))))((((((....(((....)))..((((......))))..........)))))).))))........................... ( -21.80) >DroSec_CAF1 25268 115 - 1 UCCUUUCACCCAAAUGGAAAAAUCCUCUUGGUCUGCGAAUCGGCAUCAGCUAAGCAAACAACAUUGCACUGCCAAACUGCGGACGGGAAAAUCAGCAUGCAAAUAAAAUAAAAUA ...((((.(((((..(((....)))..)))(((((((....((((...((...............))..))))....)))))))))))))......................... ( -23.76) >DroSim_CAF1 24825 115 - 1 UCCUUUCACCCAAAUGGAAAAAUCCUCUUGGUCUGCGAAUCGGCAUCAGCUAAGCAAACAACAUUGCACUGCCAAACUGCGGACGGGAAAAUCAGCAUGCAAAUAAAAUAAAAUA ...((((.(((((..(((....)))..)))(((((((....((((...((...............))..))))....)))))))))))))......................... ( -23.76) >DroEre_CAF1 25702 115 - 1 CCCUUUCACCUAAAUGAAAAAAUCCUCUUGGUCUGCGAAUCAGCAUCAGCUAAGCAAACAACAUUGCACUGCCAAACUGCGGACGGGAAAAUCAGCAUGCAAAUAAAAUAAAAUA ((((((((......)))))...........(((((((....(((....)))..((((......))))..........))))))))))............................ ( -21.50) >DroYak_CAF1 25635 114 - 1 CCCUUUCACCUAAAUGAA-AAAUCCUCUUGGUCUGCGAAUCAGCAUCAGCUAAGCAAACAACAUUGCACUGCCAAACUGCGGACGGGAAAAUCAGCAUGCAAAUAAAAUAAAAUA ((((((((......))))-)..........(((((((....(((....)))..((((......))))..........))))))))))............................ ( -21.50) >consensus UCCUUUCACCCAAAUGGAAAAAUCCUCUUGGUCUGCGAAUCAGCAUCAGCUAAGCAAACAACAUUGCACUGCCAAACUGCGGACGGGAAAAUCAGCAUGCAAAUAAAAUAAAAUA ...((((.(((((..(((....)))..)))(((((((....(((....)))..((((......))))..........)))))))))))))......................... (-20.10 = -19.86 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:01 2006