Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,160,295 – 19,160,396 |
Length | 101 |
Max. P | 0.647109 |
Location | 19,160,295 – 19,160,396 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.48 |
Mean single sequence MFE | -29.13 |
Consensus MFE | -15.93 |
Energy contribution | -16.18 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.14 |
Mean z-score | -2.90 |
Structure conservation index | 0.55 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.557158 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19160295 101 + 23771897 GCGCCUUU------------UUGUAUCUG-------CGAGAUACAAAUCAUGCAGAUACUUUUACCGCCACACUUUGCUCUUGCGAAAUCAGCAAAAUGGGCUUGCCAAUACACUCGCAC (((.....------------..(((((((-------((.(((....))).))))))))).......(((.((.((((((..(.....)..)))))).))))).............))).. ( -29.50) >DroSec_CAF1 23292 101 + 1 GCGCCUUU------------UUGUAUCUG-------CGAGAUACAAAUCAUGCAGAUACUUUUUCCGCCACACUUUGCUCUUGCGAAAUCAGCAAAAUGGGCUUGCCAAUAUACUCGCAC (((.....------------..(((((((-------((.(((....))).))))))))).......(((.((.((((((..(.....)..)))))).))))).............))).. ( -29.50) >DroAna_CAF1 16036 110 + 1 GCGCCUUUUACCGCGCACAUUUGUAUCUGCUGGAUGCGAGAUACAAAUCUUGCAGAU----UUCUCGCUACGCUUCGGUUUUGCGAAAUCAGCAA-AUGGGUUUGCCAAUACCA-----G ((((........)))).(((((((..........((((((((....))))))))(((----(..((((...((....))...)))))))).))))-)))(((........))).-----. ( -35.60) >DroSim_CAF1 22839 101 + 1 GCGCCUUU------------UUGUAUCUG-------CGAGAUACAAAUCAUGCAGAUACUUUUUCCGCCACACUUUGCUCUUGCGAAAUCAGCAAAAUGGGCUUGCCAAUAUACUAGCAG ((......------------..(((((((-------((.(((....))).))))))))).......(((.((.((((((..(.....)..)))))).)))))..............)).. ( -28.50) >DroEre_CAF1 23787 101 + 1 GCGCCUUU------------UUGUAUCUG-------CGAGAUACAAAUCAUGCAGAUACUUUUUCCGCCACACUUUGCUCUUGCGAAAUCAGCAAAAUGGGCUUGCCAAUACCCAUACCA ((......------------..(((((((-------((.(((....))).))))))))).......(((.((.((((((..(.....)..)))))).)))))..)).............. ( -27.40) >DroYak_CAF1 23742 101 + 1 GCGCCUUU------------UUGUAUCUG-------CGAAAUACAAAUCAUGCAGAUACUUUUGCCGCCACACUUUGCUCUUGCGAAAUCAGCAAAAUGGGCUUGCCAAUACCGAUACCA ((((....------------..(((((((-------((..((....))..)))))))))....)).(((.((.((((((..(.....)..)))))).)))))..)).............. ( -24.30) >consensus GCGCCUUU____________UUGUAUCUG_______CGAGAUACAAAUCAUGCAGAUACUUUUUCCGCCACACUUUGCUCUUGCGAAAUCAGCAAAAUGGGCUUGCCAAUACACUCGCAA ((..................((((((((..........))))))))....................(((.((.((((((..(.....)..)))))).)))))..)).............. (-15.93 = -16.18 + 0.25)
Location | 19,160,295 – 19,160,396 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.48 |
Mean single sequence MFE | -34.45 |
Consensus MFE | -19.58 |
Energy contribution | -20.77 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.04 |
Mean z-score | -3.02 |
Structure conservation index | 0.57 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.647109 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19160295 101 - 23771897 GUGCGAGUGUAUUGGCAAGCCCAUUUUGCUGAUUUCGCAAGAGCAAAGUGUGGCGGUAAAAGUAUCUGCAUGAUUUGUAUCUCG-------CAGAUACAA------------AAAGGCGC ((((..............(((((((((((.....((....)))))))))).))).......((((((((..(((....)))..)-------)))))))..------------....)))) ( -35.80) >DroSec_CAF1 23292 101 - 1 GUGCGAGUAUAUUGGCAAGCCCAUUUUGCUGAUUUCGCAAGAGCAAAGUGUGGCGGAAAAAGUAUCUGCAUGAUUUGUAUCUCG-------CAGAUACAA------------AAAGGCGC ((((..............(((((((((((.....((....)))))))))).))).......((((((((..(((....)))..)-------)))))))..------------....)))) ( -35.80) >DroAna_CAF1 16036 110 - 1 C-----UGGUAUUGGCAAACCCAU-UUGCUGAUUUCGCAAAACCGAAGCGUAGCGAGAA----AUCUGCAAGAUUUGUAUCUCGCAUCCAGCAGAUACAAAUGUGCGCGGUAAAAGGCGC .-----.((.((..(((((....)-))))..)).))((...(((...(((((((((...----.)).))...((((((((((.((.....)))))))))))).)))))))).....)).. ( -34.00) >DroSim_CAF1 22839 101 - 1 CUGCUAGUAUAUUGGCAAGCCCAUUUUGCUGAUUUCGCAAGAGCAAAGUGUGGCGGAAAAAGUAUCUGCAUGAUUUGUAUCUCG-------CAGAUACAA------------AAAGGCGC .((((((....)))))).(((((((((((.....((....)))))))))).))).......((((((((..(((....)))..)-------)))))))..------------........ ( -35.70) >DroEre_CAF1 23787 101 - 1 UGGUAUGGGUAUUGGCAAGCCCAUUUUGCUGAUUUCGCAAGAGCAAAGUGUGGCGGAAAAAGUAUCUGCAUGAUUUGUAUCUCG-------CAGAUACAA------------AAAGGCGC ..............((..(((((((((((.....((....)))))))))).))).......((((((((..(((....)))..)-------)))))))..------------....)).. ( -33.60) >DroYak_CAF1 23742 101 - 1 UGGUAUCGGUAUUGGCAAGCCCAUUUUGCUGAUUUCGCAAGAGCAAAGUGUGGCGGCAAAAGUAUCUGCAUGAUUUGUAUUUCG-------CAGAUACAA------------AAAGGCGC ..............((..(((((((((((.....((....)))))))))).))).......((((((((..(((....)))..)-------)))))))..------------....)).. ( -31.80) >consensus CUGCAAGGGUAUUGGCAAGCCCAUUUUGCUGAUUUCGCAAGAGCAAAGUGUGGCGGAAAAAGUAUCUGCAUGAUUUGUAUCUCG_______CAGAUACAA____________AAAGGCGC ..............((..(((((((((((.....((....)))))))))).))).......(((((((.......((.....)).......)))))))..................)).. (-19.58 = -20.77 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:00 2006