Locus 7105

Sequence ID 3L_DroMel_CAF1
Location 19,158,769 – 19,158,880
Length 111
Max. P 0.791987
window11527

overview

Window 7

Location 19,158,769 – 19,158,880
Length 111
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 94.50
Mean single sequence MFE -30.92
Consensus MFE -27.16
Energy contribution -27.52
Covariance contribution 0.36
Combinations/Pair 1.03
Mean z-score -1.53
Structure conservation index 0.88
SVM decision value 0.59
SVM RNA-class probability 0.791987
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19158769 111 - 23771897
UGUUUAACUGUUUGUCUCAACCACCC---------GGUGGCAGUCUGUUUGGCCUGCUAAUAUGCAAACAGAGCUGCCAACUUAAUGAAAUUGAAAUGAGCAAAUUAGACAACGUUUGUG
(((((((.((((..(.((((((....---------))((((((((((((((.............)))))))).))))))...........)))).)..))))..)))))))......... ( -31.52)
>DroSec_CAF1 21771 111 - 1
UGUUUAACUGUUUGGCUCAACCACCC---------GGUGGCAGUCUGUUUGGCCUGCUAAUAUGCAAACAGAGCUGCCAACUUAAUGAAAUUGAAAUGAGCAAAUUAGACAACGUUUGUG
((((((...(((((.(((((((....---------)))(((((((((((((.............)))))))).)))))..................)))))))))))))))......... ( -31.32)
>DroAna_CAF1 14511 120 - 1
UGUUUGAAUGUUUGACUCACCCACCCACCCGGGCUGGUGGCAGGCUGUUUGGGCUGCUAAUAUGCAAACAGAGCUGCCAACUUAAUGAAAUUGAAAUGAGCAAAUUAGACAACGUUUGUG
((((((...(((((.((((.((((((....))).)))((((((.(((((((.(.........).)))))))..)))))).................)))))))))))))))......... ( -35.40)
>DroSim_CAF1 21311 111 - 1
UGUUUAACUGUUUGGCUCAACCACCC---------GGUGGCAGUCUGUUUGGCCUGCUAAUAUGCAAACAGAGCUGCCAACUUAAUGAAAUUGAAAUGAGCAAAUUAGACAACGUUUGUG
((((((...(((((.(((((((....---------)))(((((((((((((.............)))))))).)))))..................)))))))))))))))......... ( -31.32)
>DroEre_CAF1 22265 111 - 1
UGUUUAACUGUUUGGCUCAACCACCC---------GGUGGCAGUCUGUUUGGCCUGCUAAUAUGCAAACAGAGCUGCCAACUUAAUGAAAUUGAAAUGAGCAAAUUAGACAACGUUUGUG
((((((...(((((.(((((((....---------)))(((((((((((((.............)))))))).)))))..................)))))))))))))))......... ( -31.32)
>DroYak_CAF1 22151 111 - 1
UGUUUAACUGUUGGGCUCAACCACCC---------GGUGGAAGUCUGUUUGGCCUGCUAAUAUGCAAACAGAGCUGCCAACUUAAUGAAAUUGAAAUGAGCAAAUUAGACAACUUUUGUG
(((((((.(((((((........)))---------((..(...((((((((.............)))))))).)..))....................))))..)))))))......... ( -24.62)
>consensus
UGUUUAACUGUUUGGCUCAACCACCC_________GGUGGCAGUCUGUUUGGCCUGCUAAUAUGCAAACAGAGCUGCCAACUUAAUGAAAUUGAAAUGAGCAAAUUAGACAACGUUUGUG
((((((...(((((.((((...(((..........)))(((((((((((((.............)))))))).)))))..................)))))))))))))))......... (-27.16 = -27.52 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:58 2006