Locus 7104

Sequence ID 3L_DroMel_CAF1
Location 19,157,694 – 19,157,803
Length 109
Max. P 0.526305
window11526

overview

Window 6

Location 19,157,694 – 19,157,803
Length 109
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 91.42
Mean single sequence MFE -28.72
Consensus MFE -22.29
Energy contribution -21.82
Covariance contribution -0.47
Combinations/Pair 1.19
Mean z-score -2.58
Structure conservation index 0.78
SVM decision value -0.01
SVM RNA-class probability 0.526305
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19157694 109 + 23771897
CAUUACGCAUGCAGUCACAGAUUGCAGUCGGGGCUCUAAAAGAAAUUAACAUAAAUUUUUAUGAGAGAGACCAUGACGGCUUAGCUCAGCCUU-----------AUGCUAAACUUCAAUA
......((((((((((...)))))).((((((.((((...(((((((......)))))))...))))...)).))))((((......))))..-----------))))............ ( -28.50)
>DroSec_CAF1 20723 109 + 1
CAUUACGCAUGCAGUCACAGAUUGCAGUCGGGGCUCUAAAAGAAAUUAACAUAAAUUUUUAUGAGAAAGACCAUGACGGCUUAGCUCAGCCUU-----------AUGCUAAACUUCAAUA
......((((((((((...)))))).((((((.(((....(((((((......)))))))..))).....)).))))((((......))))..-----------))))............ ( -24.40)
>DroAna_CAF1 13440 109 + 1
CAUUACGCAUGCAGUCACAGAUUGCAGCCAGGGCUCUAAAUGAAAUUAACAUAAAUUUUUAUGAGUGCGACCAUGACUGUUUAACUUUGCCUU-----------AUGCUUAACUUCAAUA
......((((((((((...))))))....(((((((.....))........(((((..(((((........)))))..))))).....)))))-----------))))............ ( -20.40)
>DroSim_CAF1 20262 109 + 1
CAUUACGCAUGCAGUCACAGAUUGCAGUCGGGGCUCUAAAAGAAAUUAACAUAAAUUUUUAUGAGAAAGACCAUGACGGCUUAGCUCAGCCCU-----------AUGCUAAACUUCAAUA
......((((((((((...))))))....(((((......(((((((......))))))).((((.(((.((.....)))))..)))))))))-----------))))............ ( -27.10)
>DroEre_CAF1 21193 120 + 1
CAUUACGCAUGCAGUCACAGAUUGCAGCCGGGGCUCUAAAAGAAAUUUACAUAAAUUUUUAUGAGAGAGACCAUGACGGUUUAGCUCAGCCCUAUAGGGCAUAUAUGCUAAACUUCAAUA
......((.(((((((...))))))))).((..((((...((((((((....))))))))...))))...)).(((.((((((((...((((....))))......)))))))))))... ( -37.80)
>DroYak_CAF1 21082 109 + 1
CAUUACGCAUGCAGUCACAGAUUGCAGCCGGGGCUCUAAAAGAAAUUAACAUAAAUUUUUAUGAGAGAGACCAUGACGGUUUAGCUCAGCCCC-----------AUGCUAAACUUCAAUA
......((((((((((...))))))....(((((......(((((((......))))))).((((..(((((.....)))))..)))))))))-----------))))............ ( -34.10)
>consensus
CAUUACGCAUGCAGUCACAGAUUGCAGCCGGGGCUCUAAAAGAAAUUAACAUAAAUUUUUAUGAGAGAGACCAUGACGGCUUAGCUCAGCCCU___________AUGCUAAACUUCAAUA
......((((((((((...)))))))...(((((......(((((((......))))))).((((.(((.((.....)))))..)))))))))............)))............ (-22.29 = -21.82 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:57 2006