| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,157,039 – 19,157,131 |
| Length | 92 |
| Max. P | 0.613222 |
| Location | 19,157,039 – 19,157,131 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.43 |
| Mean single sequence MFE | -23.15 |
| Consensus MFE | -16.75 |
| Energy contribution | -16.33 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.613222 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19157039 92 - 23771897 CUUC---------------------------GUAUUUUCCUGGAAGUGCAAGCCAAGCUGACGG-GACAAGAGUUUUGUAAAUAAACAAAGCUGAUAAACUUUGAAAUAAAUUCCGGAGU ((((---------------------------(.....(((((..(((.........)))..)))-))....((((((((......)))))))).....................))))). ( -20.50) >DroSec_CAF1 20068 92 - 1 CUUC---------------------------GUAUUUUCCUGGAAGUGCAAGCCAAGCUGGCGG-GACAAGAGUUUUGUAAAUAAACAAAGCUGAUAAACUUUGAAAUAAAUUCCGGAGU ((((---------------------------(((((((....)))))))..(((.....)))((-((....((((((((......))))))))((......))........)))))))). ( -21.30) >DroAna_CAF1 12731 120 - 1 UUUUUUUUUAUUCUUCUAUCUAGUCUAUAGAGCAUUUCAGUGGAAAUGCAAAGCAAUCUGGUGGGGGCAAGGGUUUUGUAAAUAAACAAAACUGAUCAACUCUGAAAUAAAUUUUAUAGC ......((((((((((((.((((........(((((((....)))))))........))))))))))....((((((((......))))))))............))))))......... ( -23.29) >DroSim_CAF1 19610 92 - 1 CUUC---------------------------GUAUUUUCCUGGAAGUGCAAGCCAAGCUGGCGG-GACAAGAGUUUUGUAAAUAAACAAAGCUGAUAAACUUUGAAAUAAAUUCCGGAGU ((((---------------------------(((((((....)))))))..(((.....)))((-((....((((((((......))))))))((......))........)))))))). ( -21.30) >DroEre_CAF1 20559 92 - 1 CUUC---------------------------CUAUUUUCGUGGAAGUGCAAGCCAAGCUGGCGG-GACAAGAGUUUUGUAAAUAAACAAAGCUGAUAAACUUUGGAAUAAAUUCCGGAGU ((((---------------------------(.........)))))(((..(((.....)))..-).))..((((((((......)))))))).....(((((((((....))))))))) ( -26.30) >DroYak_CAF1 20445 92 - 1 CUUC---------------------------GUAUUUUCGUGGAAGUGCAAGCCAAGCUGGCGG-GACAAGAGUUUUGUAAAUAAACAAAGCUGAUAAACUUUGGAAUAAAUUCCGGAGU ....---------------------------(((((((....)))))))..(((.....)))..-......((((((((......)))))))).....(((((((((....))))))))) ( -26.20) >consensus CUUC___________________________GUAUUUUCCUGGAAGUGCAAGCCAAGCUGGCGG_GACAAGAGUUUUGUAAAUAAACAAAGCUGAUAAACUUUGAAAUAAAUUCCGGAGU ...............................(((((((....)))))))..(((.....))).........((((((((......)))))))).....((((((..........)))))) (-16.75 = -16.33 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:56 2006