Locus 7101

Sequence ID 3L_DroMel_CAF1
Location 19,155,193 – 19,155,300
Length 107
Max. P 0.527616
window11518

overview

Window 8

Location 19,155,193 – 19,155,300
Length 107
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 82.76
Mean single sequence MFE -27.26
Consensus MFE -21.46
Energy contribution -21.82
Covariance contribution 0.36
Combinations/Pair 1.16
Mean z-score -1.48
Structure conservation index 0.79
SVM decision value -0.01
SVM RNA-class probability 0.527616
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19155193 107 - 23771897
CGAUGUCAUUAACUGUCAUCUGCGCUCGCAAUUUCCGUUCAUGCGGGCUUA-----UAAAUUGCGAGAAGAAUAGGGACAAGAUGUCAAAGUUCAUGCCAAGUGAACUUGGU-----
.((((.((.....)).))))....((((((((((((((....)))))....-----..)))))))))..((((...(((.....)))...))))..((((((....))))))----- ( -34.90)
>DroSec_CAF1 18189 106 - 1
CGAUGUCGUUAGCUGUCAUCUGCGCUCGCAAUUUCCGUUUAUGCGGGCUUAUACUAUAAAUUGCGAGAAGAAAAGGGAAAAGAUAUCAAAGUUCA-----------CUUGGUAUAUC
.((((((.....((.(..(((...((((((((((((((....)))))...........))))))))).)))..).))....))))))........-----------........... ( -27.30)
>DroSim_CAF1 17765 97 - 1
CGAUGUCGUUAACUGUCAUCUGCGCUCGCAAUUUCCGUUCAUGCGGGCUUA-----UAAAUUGCGAGAAGAAAAGGGAAAAAAUAUCAAAGUUCA-----------CUUUGUA----
.(((((..((..((....(((...((((((((((((((....)))))....-----..))))))))).)))...))..))..)))))((((....-----------))))...---- ( -25.50)
>DroEre_CAF1 18751 96 - 1
CGAUGUCGUUAACUGUCAUCCGCGCUCGCAAUUUCCGUUCAUGCGGGCUUA-----AGGAUUGCGGAGAGAAAAGGGA-AAGAUAUCAGAGUUCA-----------UUUGAUA----
.((((((.((..((.((.((((((((((((...........)))))))...-----......)))))..))..))..)-).))))))........-----------.......---- ( -25.80)
>DroYak_CAF1 18583 97 - 1
CGAUGUCGUUAACUGUCAUCUGCGCUCGCAAUUUCCGUUCAUGCGGGCUUA-----UAAAUUGUGAAGUGAAAAGGGAAAAGAUAUCAAAGCUCA-----------CUAGAUA----
.((((((........((.(((.((((((((((((((((....)))))....-----..))))))).))))...)))))...))))))........-----------.......---- ( -22.80)
>consensus
CGAUGUCGUUAACUGUCAUCUGCGCUCGCAAUUUCCGUUCAUGCGGGCUUA_____UAAAUUGCGAGAAGAAAAGGGAAAAGAUAUCAAAGUUCA___________CUUGGUA____
.((((((.....((....(((...((((((((((((((....)))))...........))))))))).)))...)).....)))))).............................. (-21.46 = -21.82 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:49 2006