Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,153,587 – 2,153,707 |
Length | 120 |
Max. P | 0.500000 |
Location | 2,153,587 – 2,153,707 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 72.06 |
Mean single sequence MFE | -36.58 |
Consensus MFE | -8.10 |
Energy contribution | -7.77 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.56 |
Mean z-score | -2.25 |
Structure conservation index | 0.22 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2153587 120 - 23771897 GCUUUAAUUCCGUAUCCCCCGAACUGGCUAAGCACCUCCUCCACCGCCAGUUGGCCAAGUCGAAACUGUAUCCCGAACGGUUCUAUUUCACUAGGGAUAUUCGAGUAAAGUACUACCACU ((((((.(((.(((((((.(((..(((((((((............))...)))))))..))).((((((.......))))))...........)))))))..)))))))))......... ( -30.40) >DroGri_CAF1 200956 120 - 1 GCCACGACUCGGUGCCGCCAGAGUUUGCUCAGCAUUUGCUCUAUCGUAGCGUGGCCAAGUCGCAGCUAUAUCCGGAAAGAUUCUAUUUUUCAAGGGAUGGCCGCACCAAGUACUACACAC ......(((.(((((.((((((((.(((...)))...)))))...((((((((((...))))).)))))((((.(((((((...)))))))...))))))).))))).)))......... ( -40.60) >DroEre_CAF1 211526 120 - 1 GCUUCAAUUCCGUAUCCCCCGACCUGGCCAAGCACCUGCUCCAUCGCCAGUUGACCAAGUCGAAACUGUACCCCGAACGGUUCUACUUCUCGAGGGAUAUUCGAGUGAAGUACUAUCACU ((((((.(((.(((((((.(((.(((((..(((....))).....)))))......((((.(((.((((.......))))))).)))).))).)))))))..)))))))))......... ( -36.00) >DroYak_CAF1 203600 120 - 1 GCUUCAACUCCGUAUCCCCCGACCUGGCCAAGCACCUGCUCCACCGCCAGUUGACCAAGUCGAAACUGUACCCCGAACGGUUCUACUUCUCGAGGGAUAUUCGAGUAAAGCACUACCACU ((((..((((.(((((((.(((.(((((..(((....))).....)))))......((((.(((.((((.......))))))).)))).))).)))))))..)))).))))......... ( -36.40) >DroMoj_CAF1 204835 120 - 1 GCAACCAUUCGGUUGCUCCAGAGUUCGCUCAGCAUUUGUUGCAUCGCAGCGUGGCCAAGUCGCAGCUGUAUCCAGAGAGAUUCUACUUUUCAAGAGAUGGCCGCACCAAAUACUAUAAUA ((((((....))))))....(((....)))((.(((((((((...)))))(((((((..((....(((....))).((((.......))))..))..)))))))...)))).))...... ( -34.80) >DroAna_CAF1 202998 120 - 1 GCCACAACUCUGUGACCCCUGAAUUCGCCCCGAACCUGCUACAUAGGCAGGUGAUCAAGUCGCAACUGUAUCCCGAGAGGUACUACUUCUCGCGGGACGGAAGAGUCAAGCACUACCACU ((....((((((((((...(((..(((...)))(((((((.....)))))))..))).)))))..((((.((((((((((.....))))))).))))))).)))))...))......... ( -41.30) >consensus GCUACAACUCCGUAUCCCCCGAACUGGCCAAGCACCUGCUCCAUCGCCAGGUGACCAAGUCGAAACUGUAUCCCGAAAGGUUCUACUUCUCGAGGGAUAGUCGAGUCAAGUACUACCACU ...............(((.....(((((..(((....))).....)))))(((((...)))))..............................)))........................ ( -8.10 = -7.77 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:09 2006