Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 279,088 – 279,188 |
Length | 100 |
Max. P | 0.867100 |
Location | 279,088 – 279,188 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.34 |
Mean single sequence MFE | -25.10 |
Consensus MFE | -16.34 |
Energy contribution | -17.30 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.17 |
Mean z-score | -2.03 |
Structure conservation index | 0.65 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.867100 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 279088 100 - 23771897 -----------AAUCAAAACGCUCAGCAGUUUGAGCAAAUUCAAGCAAAGCUGAC-ACCGUUUUACUGAUAAGCAGAUUAGAGGACGAAUUGAUUAUUCAUACAU--------AUGUUCA -----------((((((...(.(((((.(((((((....)))))))...))))))-..((((((.(((((......)))))))))))..))))))..........--------....... ( -22.60) >DroSec_CAF1 51223 104 - 1 -----------AAUCAAAACGCUCAGCAGUUUGAGCAAAUUCAUGCAAAGCUGGC-ACCGUUUUACUGAUAAGCAGAUUAGAGGACGGAUUGAUUAUUAACACAUAUGU----AUGUUCA -----------((((((...((.((((.((.((((....)))).))...))))))-.(((((((.(((((......)))))))))))).))))))......((((....----))))... ( -25.20) >DroSim_CAF1 47014 108 - 1 -----------AAUCAAAACGCUCAGCAGUUUGAGCAAAUUCAUGCAAAGCUGGC-ACCGUUUUACUGAUAAGCAGAUUAGAGGACGGAUUGAUUAUUAACACAUAUGUACAUAUGUUCA -----------((((((...((.((((.((.((((....)))).))...))))))-.(((((((.(((((......)))))))))))).))))))......((((((....))))))... ( -28.30) >DroEre_CAF1 50705 115 - 1 GCUGCUAUUUCAAUCAAAGUGCUCAGCAGUUUGAGCAAAUUCAAACAAAGCUAAAAAGCGUAUUACUGAUAAGCAGAUUAGAGGAUGGACUGAUUAUUUAUACAUU-CU----AUGUACA .(((((...(((.......(((((((....)))))))............(((....))).......)))..))))).....((((((...(((....)))..))))-))----....... ( -23.00) >DroYak_CAF1 47368 114 - 1 GCUGCUAUUUCAAUCAAAAUGCUCAGCAGUUUGAGCAAAUUCAAACAGAGCUGAC-AUUGCUUUACUGAUAAGCACAUUAUAGGAAGGACUGAUUAUUCCUAUAUA-CU----AUGUACA ...(((...(((.....((((.(((((.(((((((....)))))))...))))))-))).......)))..)))((((((((((((..........))))))))..-..----))))... ( -26.40) >consensus ___________AAUCAAAACGCUCAGCAGUUUGAGCAAAUUCAAGCAAAGCUGAC_ACCGUUUUACUGAUAAGCAGAUUAGAGGACGGAUUGAUUAUUAAUACAUA_CU____AUGUUCA ...........(((((......(((((.(((((((....)))))))...)))))...(((((((.(((((......))))))))))))..)))))......................... (-16.34 = -17.30 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:33 2006