Locus 71

Sequence ID 3L_DroMel_CAF1
Location 279,088 – 279,188
Length 100
Max. P 0.867100
window100

overview

Window 0

Location 279,088 – 279,188
Length 100
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 80.34
Mean single sequence MFE -25.10
Consensus MFE -16.34
Energy contribution -17.30
Covariance contribution 0.96
Combinations/Pair 1.17
Mean z-score -2.03
Structure conservation index 0.65
SVM decision value 0.85
SVM RNA-class probability 0.867100
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 279088 100 - 23771897
-----------AAUCAAAACGCUCAGCAGUUUGAGCAAAUUCAAGCAAAGCUGAC-ACCGUUUUACUGAUAAGCAGAUUAGAGGACGAAUUGAUUAUUCAUACAU--------AUGUUCA
-----------((((((...(.(((((.(((((((....)))))))...))))))-..((((((.(((((......)))))))))))..))))))..........--------....... ( -22.60)
>DroSec_CAF1 51223 104 - 1
-----------AAUCAAAACGCUCAGCAGUUUGAGCAAAUUCAUGCAAAGCUGGC-ACCGUUUUACUGAUAAGCAGAUUAGAGGACGGAUUGAUUAUUAACACAUAUGU----AUGUUCA
-----------((((((...((.((((.((.((((....)))).))...))))))-.(((((((.(((((......)))))))))))).))))))......((((....----))))... ( -25.20)
>DroSim_CAF1 47014 108 - 1
-----------AAUCAAAACGCUCAGCAGUUUGAGCAAAUUCAUGCAAAGCUGGC-ACCGUUUUACUGAUAAGCAGAUUAGAGGACGGAUUGAUUAUUAACACAUAUGUACAUAUGUUCA
-----------((((((...((.((((.((.((((....)))).))...))))))-.(((((((.(((((......)))))))))))).))))))......((((((....))))))... ( -28.30)
>DroEre_CAF1 50705 115 - 1
GCUGCUAUUUCAAUCAAAGUGCUCAGCAGUUUGAGCAAAUUCAAACAAAGCUAAAAAGCGUAUUACUGAUAAGCAGAUUAGAGGAUGGACUGAUUAUUUAUACAUU-CU----AUGUACA
.(((((...(((.......(((((((....)))))))............(((....))).......)))..))))).....((((((...(((....)))..))))-))----....... ( -23.00)
>DroYak_CAF1 47368 114 - 1
GCUGCUAUUUCAAUCAAAAUGCUCAGCAGUUUGAGCAAAUUCAAACAGAGCUGAC-AUUGCUUUACUGAUAAGCACAUUAUAGGAAGGACUGAUUAUUCCUAUAUA-CU----AUGUACA
...(((...(((.....((((.(((((.(((((((....)))))))...))))))-))).......)))..)))((((((((((((..........))))))))..-..----))))... ( -26.40)
>consensus
___________AAUCAAAACGCUCAGCAGUUUGAGCAAAUUCAAGCAAAGCUGAC_ACCGUUUUACUGAUAAGCAGAUUAGAGGACGGAUUGAUUAUUAAUACAUA_CU____AUGUUCA
...........(((((......(((((.(((((((....)))))))...)))))...(((((((.(((((......))))))))))))..)))))......................... (-16.34 = -17.30 +   0.96) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:33 2006