Locus 7098

Sequence ID 3L_DroMel_CAF1
Location 19,153,553 – 19,153,673
Length 120
Max. P 0.547459
window11512

overview

Window 2

Location 19,153,553 – 19,153,673
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 94.94
Mean single sequence MFE -25.16
Consensus MFE -22.88
Energy contribution -23.38
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.03
Structure conservation index 0.91
SVM decision value 0.03
SVM RNA-class probability 0.547459
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19153553 120 + 23771897
AUUGUCAAACACAAAGCUUGCCGCUUGUCCUGUUCAGCAUAUCCUAGGUCCUUUGCCUCACUUCGCCUGUCUUCGGCGUCACUCAACGCCACUGUUUGUUUGUCAACAACCCGAACCCAU
.(((.((((((..((((.....))))........(((.......(((((...............))))).....(((((......))))).)))..)))))).))).............. ( -22.06)
>DroSec_CAF1 16437 120 + 1
AUUGUCAAACACAAAGCUUGCCGCUUGUCCUGUUCAGCAUAUCCUAGGUCCUUUGCCUCAUUUCGCCUGUCUUCGGCGUCACUCAACGCCGCUGUUUGUUUGUCAACAACCCGAACCCAU
.(((.((((((..((((.....))))........((((......(((((....((...))....))))).....(((((......)))))))))..)))))).))).............. ( -26.80)
>DroAna_CAF1 9555 115 + 1
AUUGUCAAACACAAAGCUCGCCGCUCCUCCAGUUCAGCAUAUCCUAGGUCCUUCGC-----UCCGCCUGUCUUCGGCGUCACUCAACGGCGCUGUUUGUUUGUCAACAACCCGAACCCAU
.(((.((((((...(((..((((((..........)))......(((((.......-----...))))).....)))(((.......))))))...)))))).))).............. ( -23.80)
>DroSim_CAF1 16098 120 + 1
AUUGUCAAACACAAAGCUUGCCGCUUGUCCUGUUCAGCAUAUCCUAGGUCCUUUGCCUCACUUCUCCUGUCUUCGGCGUCACUCAACGCCGCUGUUUGUUUGUCAACAACCCGAACCCAU
.(((.((((((..((((.....))))........((((.......((((.....))))................(((((......)))))))))..)))))).))).............. ( -26.40)
>DroEre_CAF1 17043 120 + 1
AUUGUCAAACACAAAGCUUGCCGCUUGUCCUGUUCAGCAUAUCCUAGGUCCUUUGCUUCACUUCGCCUGUCUUCGGCGUCACUCAACGCCGCUGUUUGUUUGUCAACAACCCGAGCCCAU
.(((.((((((..((((.....))))........((((......(((((...............))))).....(((((......)))))))))..)))))).))).............. ( -26.56)
>DroYak_CAF1 17187 120 + 1
AUUGUCAAACACAAAGCUUGCCGCUUGUCCUGUUCAGCAUAUCCUAGGUCCUUUGCUUCACUUCUCCUGUCUUCGGCGUCACUCAACGCCGCUGUUUGUUUGUCAACAACCCGAGCCCAU
.(((.((((((..((((.....))))........((((......((((.................)))).....(((((......)))))))))..)))))).))).............. ( -25.33)
>consensus
AUUGUCAAACACAAAGCUUGCCGCUUGUCCUGUUCAGCAUAUCCUAGGUCCUUUGCCUCACUUCGCCUGUCUUCGGCGUCACUCAACGCCGCUGUUUGUUUGUCAACAACCCGAACCCAU
.(((.((((((..((((.....))))........((((......((((.................)))).....(((((......)))))))))..)))))).))).............. (-22.88 = -23.38 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:44 2006