| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,153,019 – 19,153,139 |
| Length | 120 |
| Max. P | 0.500000 |
| Location | 19,153,019 – 19,153,139 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.16 |
| Mean single sequence MFE | -29.50 |
| Consensus MFE | -22.55 |
| Energy contribution | -22.63 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.76 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19153019 120 + 23771897 GGGAGCCAUUUAACUAACGUACCUACUGCUGAUUUUUGUCAGUGCACCUGAUAUUGAAGGCAAACCAGAGGCCGCUUUUCAAGUGGCUAUCAAUCGUUGCCCUUGCCGGUUUCUGUUUCU (..((((.((((((....)).......((((((....))))))...........)))))))....(((((((((.....((((.(((...........))))))).))))))))))..). ( -32.70) >DroSec_CAF1 15904 118 + 1 GGGAGCCAUUUCAG--AAGAUUCUACUGCUGAUUUUUGUCAGUGCACCUGAUAUAGAAGGAAAACCAGAGGCCGCUUUUCAAGUGGCUAUCAAUCGUUGCCCUUGCCGGUUGCUGUUUCU ...((((((((.((--(((.((((...((((((....))))))...(((........)))......))))....))))).))))))))..((((((..((....))))))))........ ( -30.30) >DroAna_CAF1 9012 96 + 1 ----------------------CUAUACAU-A-UUCUUCCAGUGCAACUGAGAGUGGAGGCAAAACAGAGACCGCUCUUCAAGUGGCUAUCAAUCGUUGCCCUUGCCGGUUUCUGUUUCU ----------------------........-.-..((((((.(.(......)).))))))..((((((((((((.....((((.(((...........))))))).)))))))))))).. ( -29.10) >DroSim_CAF1 15565 118 + 1 GGGACCCAUUUAAG--AAGAUCCUACUGCUGAUUUUUGUCAGUGCACCUGAUAUUGAAGGCAAACCAGAGGCCGCUUUUCAAGUGGCUAUCAAUCGUUGCCCUUGCCGGUUUCUGUUUCU ............((--(((.......((((..((..((((((.....))))))..)).))))...(((((((((.....((((.(((...........))))))).)))))))))))))) ( -31.60) >DroEre_CAF1 16532 102 + 1 ------------------CAUCCUACUAAUAGUUUUUGUCAGUGCACCUCAUACCGAAGGCAAACCAGAGGCCGUUUUUCAAGUGGCUAUCAAUCGUUGCCCUUGCCGGUUUCUGUUUCU ------------------.............(((((((...(((.....)))..)))))))....(((((((((.....((((.(((...........))))))).)))))))))..... ( -24.00) >DroYak_CAF1 16665 113 + 1 -----UUUUUUCAG--ACCAUGCCACUGCUAGUUUUUGUCAGUGCACCUGAUAUUGAAGGCAAACCAGAGGCCGUUUUUCAAGUGGCUAUCAAUCGUUGCCCUUGCCGGUUUCUGUUUCU -----.........--..........((((..((..((((((.....))))))..)).))))...(((((((((.....((((.(((...........))))))).)))))))))..... ( -29.30) >consensus _____CCAUUU_AG__A_GAUCCUACUGCUGAUUUUUGUCAGUGCACCUGAUAUUGAAGGCAAACCAGAGGCCGCUUUUCAAGUGGCUAUCAAUCGUUGCCCUUGCCGGUUUCUGUUUCU ....................................((((((.....))))))............(((((((((.....((((.(((...........))))))).)))))))))..... (-22.55 = -22.63 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:42 2006