Locus 7096

Sequence ID 3L_DroMel_CAF1
Location 19,152,695 – 19,152,791
Length 96
Max. P 0.793799
window11510

overview

Window 0

Location 19,152,695 – 19,152,791
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 91.63
Mean single sequence MFE -29.86
Consensus MFE -23.44
Energy contribution -24.88
Covariance contribution 1.44
Combinations/Pair 1.04
Mean z-score -1.75
Structure conservation index 0.78
SVM decision value 0.59
SVM RNA-class probability 0.793799
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19152695 96 + 23771897
AAGGCCCAAAAAACCACCCGAAACCCACAAAUGUUCUCCACCGCUCCACAUGCUGCGAUCUGGGAGCCCCAAUUGCAGGAGUAGUUUGUGGGCAAG
.......................(((((((((...((((...((.......))((((((.((((...))))))))))))))..))))))))).... ( -31.80)
>DroSec_CAF1 15508 96 + 1
AAGCCCCAAAAAACCACCCGGAACCCACAAAUGUUCUCCACCGCUCCACAUGCUGCGAUCUGGGAGCCCCAACUGCAGGAGUAGUUUGUGGUCGAG
.............((....))...((((((((...((((...((.......))((((...((((...))))..))))))))..))))))))..... ( -26.10)
>DroSim_CAF1 15183 96 + 1
AAGCCCCAAAAAACCACCCGGAACCCACAAAUGUUCUCCACCGCUCCACAUGCUGCGAUCUGGGAGCCCCAACUGCAGGAGUAGUUUGUGGGCGAG
.............((....))..(((((((((...((((...((.......))((((...((((...))))..))))))))..))))))))).... ( -29.40)
>DroEre_CAF1 16145 92 + 1
AAGCCCCAA-AAACCACCCGGAACCCACAAAUGUUCUCCACUG---CACAUGCUGCGAUCUGGGAGCCCCAGUUGCAGGAGUAGUUUGUGGGCGAG
.........-...((....))..(((((((((...((((...(---(....))(((((.(((((...))))))))))))))..))))))))).... ( -34.70)
>DroYak_CAF1 16264 91 + 1
AAGCCCCCA-AAACCACCCGGAACCCCCCAAUGUUCUCCACUG---CACAUGCUGCGAUCUG-GAGCCCCAAUUGCAGGAGUAGUUUGUGGGUGCG
..(((((((-(........(((((........)))))..((((---(...(.(((((((.((-(....)))))))))).))))))))).))).)). ( -27.30)
>consensus
AAGCCCCAAAAAACCACCCGGAACCCACAAAUGUUCUCCACCGCUCCACAUGCUGCGAUCUGGGAGCCCCAAUUGCAGGAGUAGUUUGUGGGCGAG
.......................(((((((((...((((...((.......))((((((.((((...))))))))))))))..))))))))).... (-23.44 = -24.88 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:41 2006