Locus 7094

Sequence ID 3L_DroMel_CAF1
Location 19,149,115 – 19,149,206
Length 91
Max. P 0.841070
window11507

overview

Window 7

Location 19,149,115 – 19,149,206
Length 91
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 91.05
Mean single sequence MFE -21.02
Consensus MFE -18.66
Energy contribution -19.98
Covariance contribution 1.31
Combinations/Pair 1.04
Mean z-score -1.70
Structure conservation index 0.89
SVM decision value 0.75
SVM RNA-class probability 0.841070
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19149115 91 - 23771897
GGGUUUAUCGUUCGCCGGGCAUCGCCUGGCUUUUCUUAUUCGAAGUUUACUCUUUAAUGAAUUUCUUGGUUCUGGCUCAACUUCUCC--------ACUU
(((((.((((...(((((((...)))))))...........((((((((........)))))))).))))...))))).........--------.... ( -22.80)
>DroSec_CAF1 12000 91 - 1
GGGUAUAUCGUUCGCCGGGCAUCGCCUGGCUUUUCUUAUUCGAAGUCUACUCUGUAAUGAAUUUCUUGGUUCUGGCUCAACUUCUCC--------ACUU
(((..........(((((((...)))))))...........(((((.......((...(((((....)))))..))...))))))))--------.... ( -21.10)
>DroSim_CAF1 11667 91 - 1
GGGUUUAUCGUUCGCCGGGCAUCGCCUGGCUUUUCUUAUUCGAAGUUUACUCUUUAAUGAAUUUCUUGGUUCUGGCUCAACUUCUCC--------ACUU
(((((.((((...(((((((...)))))))...........((((((((........)))))))).))))...))))).........--------.... ( -22.80)
>DroEre_CAF1 12504 99 - 1
GGGUUUAUCGUUCGCCGGGCAUCGCUUGGCUUUUCUUACUCGAUUUUUACUCUUUAACGAAUUUCUUGGAUCUGGCUCAACUUCUCCACUUCUCCACUU
(((....(((((.(((((((...)))))))...((......))............)))))......((((...(......)...))))....))).... ( -17.40)
>consensus
GGGUUUAUCGUUCGCCGGGCAUCGCCUGGCUUUUCUUAUUCGAAGUUUACUCUUUAAUGAAUUUCUUGGUUCUGGCUCAACUUCUCC________ACUU
(((((.((((...(((((((...)))))))...........((((((((........)))))))).))))...)))))..................... (-18.66 = -19.98 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:39 2006