Locus 7093

Sequence ID 3L_DroMel_CAF1
Location 19,148,857 – 19,148,958
Length 101
Max. P 0.767552
window11506

overview

Window 6

Location 19,148,857 – 19,148,958
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 94.91
Mean single sequence MFE -14.50
Consensus MFE -14.50
Energy contribution -14.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.10
Structure conservation index 1.00
SVM decision value 0.52
SVM RNA-class probability 0.767552
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19148857 101 - 23771897
AAAAAAAAAGUAAAAACUACUAAGGGGACUCGAAAAUACGAUACUGAAAAAAAUGCAUAUAGGAAUUAUGAGACAGUCAUGGCACAUAAAUUCCUCAAUGU
........((((...........(....)(((......))))))).........((((..((((((((((.(.((....)).).))).)))))))..)))) ( -14.50)
>DroSec_CAF1 11744 99 - 1
AA--AAAAAGUAAAAUCUACUAAGGGGACUCGAAAAUACGAUACUGAACAAAAUGCAUAUAGGAAUUAUGAGACAGUCAUGGCACAUAAAUUCCUCAAUGU
..--....((((...........(....)(((......))))))).........((((..((((((((((.(.((....)).).))).)))))))..)))) ( -14.50)
>DroSim_CAF1 11413 97 - 1
A----AAAAGUAAAAUCUACUAAGGGGACUCGAAAAUACGAUACUGAACAAAAUGCAUAUAGGAAUUAUGAGACAGUCAUGGCACAUAAAUUCCUCAAUGU
.----...((((...........(....)(((......))))))).........((((..((((((((((.(.((....)).).))).)))))))..)))) ( -14.50)
>DroEre_CAF1 12247 100 - 1
CA-AAAAAAGUAAAAAAUACUAAGGGGACUCGAAAAUACGAUACUGAACAAAAUGCAUAUAGGAAUUAUGAGACAGUCAUGGCACAUAAAUUCCUCAAUGU
..-.....((((...........(....)(((......))))))).........((((..((((((((((.(.((....)).).))).)))))))..)))) ( -14.50)
>DroYak_CAF1 12343 98 - 1
---AAAAAAGUAAGAAAUACUAAGGGGACUCGAAAAUACGAUACUGAACAAAAUGCAUAUAGGAAUUAUGAGACAGCCAUGGCACAUAAAUUCCUCAAUGU
---.....((((...........(....)(((......))))))).........((((..((((((((((.(.((....)).).))).)))))))..)))) ( -14.50)
>consensus
AA_AAAAAAGUAAAAACUACUAAGGGGACUCGAAAAUACGAUACUGAACAAAAUGCAUAUAGGAAUUAUGAGACAGUCAUGGCACAUAAAUUCCUCAAUGU
........((((...........(....)(((......))))))).........((((..((((((((((.(.((....)).).))).)))))))..)))) (-14.50 = -14.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:38 2006