Locus 7089

Sequence ID 3L_DroMel_CAF1
Location 19,147,025 – 19,147,131
Length 106
Max. P 0.565390
window11500

overview

Window 0

Location 19,147,025 – 19,147,131
Length 106
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.62
Mean single sequence MFE -25.02
Consensus MFE -12.17
Energy contribution -12.20
Covariance contribution 0.03
Combinations/Pair 1.29
Mean z-score -2.92
Structure conservation index 0.49
SVM decision value 0.06
SVM RNA-class probability 0.565390
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19147025 106 + 23771897
CAGCUCAGAUAUUUAUGACAAACAAUCAACACC-----CGCAA-ACAGCACA--CACAACACAUGACUUGUAUCGGAAACCAAAGGCUUUAUGGG-GCUAUAGAUAUCUGAGCUA-----
.(((((((((((((((((.......))....((-----(((..-...))...--.......(((((...((...(....).....)).)))))))-)..))))))))))))))).----- ( -28.90)
>DroSec_CAF1 9898 108 + 1
CAGCUCCGAUAUUUAUGACAAACAAUCAACACC-----CGCAA-ACAACACACACACAACACAUGACUUGUAUCGGAAACCAAAGGCUUUAUGGG-GCUAUAGAUAUCUGAGCUA-----
.(((((.(((((((((................(-----((...-((((..((...........))..))))..)))........(((((....))-)))))))))))).))))).----- ( -22.20)
>DroAna_CAF1 2821 115 + 1
CAGCUCAGAUAUUUAUGACAAACAAUCAACACACCACUCGUAGCACAGCAAA--CACA---CAUGGCUUGUACCGGUAGCUGAAAGCUAUAUAUAUUCUAUAUAUGUGCGGACUACAAUA
..(.(((........))))....................((((..(.(((..--....---.((((..((((...(((((.....))))).))))..)))).....))))..)))).... ( -17.20)
>DroSim_CAF1 9566 106 + 1
CAGCUCCGCUAUUUAUGACAAACAAUCAACACC-----CGCAA-ACAACACA--CACAACACAUGACUUGUAUCGGAAACCAAAGGCUUUAUGGG-GCUAUAGAUAUCUGAGCUA-----
.(((((.(.(((((((................(-----((...-((((..((--.........))..))))..)))........(((((....))-)))))))))).).))))).----- ( -17.80)
>DroEre_CAF1 10300 105 + 1
CAGCUCAGAUAUUUAUGACGAACAAUCAACACC-----CGCAA-CCAACAAA--CACA-CAUGUAACUUGUAUCGGAAACCAGAGGCUUUAUGGA-GCUAUAGAUAUCUGAGCUA-----
.(((((((((((((((................(-----((...-.(((...(--((..-..)))...)))...)))........(((((....))-)))))))))))))))))).----- ( -27.90)
>DroYak_CAF1 10410 103 + 1
CAGCUCAGAUAUUUAUGGCAAACAAUCAACACC-----CGCAA-ACAACAAA--CAUA-CAUG--ACUUGUAUCGGAAAGCAAAGGCUUUAUGGA-GCUAUAGAUAUCUGAGCUA-----
.((((((((((((((((((.............(-----((...-........--.(((-((..--...))))))))(((((....))))).....-)))))))))))))))))).----- ( -36.10)
>consensus
CAGCUCAGAUAUUUAUGACAAACAAUCAACACC_____CGCAA_ACAACAAA__CACA_CACAUGACUUGUAUCGGAAACCAAAGGCUUUAUGGA_GCUAUAGAUAUCUGAGCUA_____
.(((((.((((((((((...........................................(((.....)))........(((.........)))....)))))))))).)))))...... (-12.17 = -12.20 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:32 2006