Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,145,401 – 19,145,521 |
Length | 120 |
Max. P | 0.742465 |
Location | 19,145,401 – 19,145,521 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.11 |
Mean single sequence MFE | -37.45 |
Consensus MFE | -29.50 |
Energy contribution | -31.08 |
Covariance contribution | 1.59 |
Combinations/Pair | 1.09 |
Mean z-score | -2.75 |
Structure conservation index | 0.79 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.742465 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19145401 120 - 23771897 AAAAUUGACAAGUUUUGAUGGCUGACAGUGCGGUUGAGCCGCGCUGGCUUUUCCACAUUUUCCCGCACAGUUGGGUUAUGCAUGAUUUGCAGUGAAAAAUGCAUAAAUGGAAAAGGAAAA ..........((((.....))))..((((((((.....)))))))).((((((((......((((......))))((((((((..(((.....)))..)))))))).))))))))..... ( -37.80) >DroSec_CAF1 8298 120 - 1 AAAAUUGACAAGUUUUGAUGGCUGACAGUGCGGUUGAGCCGCGCUGGCUUUUCCACAUUUUCCCGCACAGUUGGGUUAUGCAUGAUUUGCAGUGAAAAAUGCAUAAAUGGAAAAGGAAAA ..........((((.....))))..((((((((.....)))))))).((((((((......((((......))))((((((((..(((.....)))..)))))))).))))))))..... ( -37.80) >DroAna_CAF1 1410 108 - 1 AAAAUUGACGAGUUCUGAUGGCUGACAGUGCGGUUGGGGCAUGCC--CCAUCCCACCUG--C--------CAUCGUUAUGCAUGAUUUGCAGUGAAAAAUGCAUAGAUGGAAAUAGGAAA ........(...((((((((((.....(((.((.(((((....))--))).)))))..)--)--------)))).((((((((..(((.....)))..))))))))..))))...).... ( -36.20) >DroSim_CAF1 7951 120 - 1 AAAAUUGACAAGUUUUGAUGGCUGACAGUGCGGUUGAGCCGCGCUGGCUUUUCCACAUUUUCCCGCACAGUUGGGUUAUGCAUGAUUUGCAGUGAAAAAUGCAUAAAUGGAAAAGGAAAA ..........((((.....))))..((((((((.....)))))))).((((((((......((((......))))((((((((..(((.....)))..)))))))).))))))))..... ( -37.80) >DroEre_CAF1 8718 120 - 1 AAAAUUGACAAGUUUUGAUGGCUGACAGUGCGGUUGAGCCGCGCUGGCUUUUCCACAUUUUCCCGCACAGUUGGGUUAUGCAUGAUUUGCAAUGAAAAAUGCAUGAAUGGAAAAGGAAAA ..........((((.....))))..((((((((.....)))))))).((((((((......((((......))))((((((((..(((.....)))..)))))))).))))))))..... ( -37.90) >DroYak_CAF1 8746 120 - 1 AAAAUUGACAAGUUUUGAUGGCUGACAGUGCGGUUGAGCCGCGCUGGCUUUUCCACAUUUUCCCGCACAGUUGGGUUAUGCAUGAUUUGCAAUGAAAAAUGCAGAAAUGGAAAAGGAAAA ..........((((.....))))..((((((((.....)))))))).(((((((((((...((((......))))..))).....((((((.(....).))))))..))))))))..... ( -37.20) >consensus AAAAUUGACAAGUUUUGAUGGCUGACAGUGCGGUUGAGCCGCGCUGGCUUUUCCACAUUUUCCCGCACAGUUGGGUUAUGCAUGAUUUGCAGUGAAAAAUGCAUAAAUGGAAAAGGAAAA ..........((((.....))))..((((((((.....)))))))).((((((((......((((......))))((((((((..(((.....)))..)))))))).))))))))..... (-29.50 = -31.08 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:29 2006