Locus 7084

Sequence ID 3L_DroMel_CAF1
Location 19,144,338 – 19,144,436
Length 98
Max. P 0.998112
window11492

overview

Window 2

Location 19,144,338 – 19,144,436
Length 98
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 93.87
Mean single sequence MFE -28.76
Consensus MFE -27.24
Energy contribution -27.48
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.88
Structure conservation index 0.95
SVM decision value 3.01
SVM RNA-class probability 0.998112
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19144338 98 + 23771897
AA--------AUGGAUGGGGAUUGAGCGGGCCGAGACCCUAUGACGAAUCAACUGGACAGCGAGCACUGCGAAAUUCCCAUGGAGACAAAGCGGGAAGAAAUCUAA
..--------.((((((((((((..((((((((....((..(((....)))...))....)).)).))))..))))))).((....))............))))). ( -29.20)
>DroSec_CAF1 7223 106 + 1
AAAAGGAAUAAUGGAUGGGGAUUAAGCGGGCCGAGACCCUAUGACGAAUCAACUGGACAGCGAGCCCUGCGAAAUUCCCAUGGAGACAAAGCGGACAGAAAUCUAA
...........((((((((((((..((((((((....((..(((....)))...))....)).)))).))..))))))).((....))............))))). ( -30.40)
>DroSim_CAF1 6841 106 + 1
AAAAGGAAUAAUGGAUGGGGAUUGAGCGGGCCGAGACCCUAUGACGAAUCAACUGGACAGCGAGCACUGCGAAAUUCCCAUGGAGACAAAGCGGGCAGAAAUCUAA
...........((((((((((((..((((((((....((..(((....)))...))....)).)).))))..))))))).((....))............))))). ( -29.20)
>DroEre_CAF1 7729 105 + 1
AAAAGCAAUAAUGGAUGGGGAUUGAGCG-GCCGAGACCCUAUGACGAAUCAACUGGACAGCGAGCACUGCGAAAUUCCCAUGGAGACAAAGCGGGCAGAAAUCCAA
...........((((((((((((..((.-((((....((..(((....)))...))....)).))...))..))))))).((....))............))))). ( -26.90)
>DroYak_CAF1 7740 106 + 1
AAAAGGAAUAAUGAAUGGGGAUUGAGCGGGCCGAGACCCUAUGACGAAUCAACUGGACAGCGAGCACUGCGAAAUUCCCAUGGAGACAAAGCGGGAAGAAAUCUAA
....(((.......(((((((((..((((((((....((..(((....)))...))....)).)).))))..)))))))))(....)..............))).. ( -28.10)
>consensus
AAAAGGAAUAAUGGAUGGGGAUUGAGCGGGCCGAGACCCUAUGACGAAUCAACUGGACAGCGAGCACUGCGAAAUUCCCAUGGAGACAAAGCGGGCAGAAAUCUAA
...........((((((((((((..((((((((....((..(((....)))...))....)).)).))))..))))))).((....))............))))). (-27.24 = -27.48 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:24 2006