Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,143,269 – 19,143,428 |
Length | 159 |
Max. P | 0.997424 |
Location | 19,143,269 – 19,143,389 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.67 |
Mean single sequence MFE | -27.58 |
Consensus MFE | -27.40 |
Energy contribution | -27.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.82 |
Structure conservation index | 0.99 |
SVM decision value | 1.89 |
SVM RNA-class probability | 0.981565 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19143269 120 + 23771897 GAGCCAUCGAAGGGAAUUUAUAAUUAAUAAAUGCCCCCAAGUGAGGCAGUGAGAACAAGUGCUGAUUAGUGCAAUGACAAAGCAAUCAAAACACUUUGGCAAACGUGGCAAUUAAAAUUC ..((((.((..(((.((((((.....)))))).)))(((((((.((((.(.......).))))(((...(((.........))))))....))).))))....))))))........... ( -27.40) >DroSec_CAF1 6182 120 + 1 GAGCCAUCGAAGGGAAUUUAUAAUUAAUAAAUGCCCCCAAGUGAGGCAGUGAGAACAAGUGCUGAUUAGUGCAAUGACAAAGCAAUCAAAACACUUUGGCAAACGUGGCAAUUAAAAUUC ..((((.((..(((.((((((.....)))))).)))(((((((.((((.(.......).))))(((...(((.........))))))....))).))))....))))))........... ( -27.40) >DroSim_CAF1 5752 120 + 1 GAGCCAUCGAAGGGAAUUUAUAAUUAAUAAAUGCCCCCAAGUGAGGCAGUGAGAACAAGUGCUGAUUAGUGCAAUGACAAAGCAAUCAAAACACUUUGGCAAACGUGGCAAUUAAAAUUC ..((((.((..(((.((((((.....)))))).)))(((((((.((((.(.......).))))(((...(((.........))))))....))).))))....))))))........... ( -27.40) >DroEre_CAF1 6637 120 + 1 GAGCCACCGAAGGGAAUUUAUAAUUAAUAAAUGCCCCCAAGUGAGGCAGUGAGAACAAGUGCUGAUUAGUGCAAUGACAAAGCAAUCAAAACACUUUGGCAAACGUGGCAAUUAAAAUUC ..(((((....(((.((((((.....)))))).)))(((((((.((((.(.......).))))(((...(((.........))))))....))).)))).....)))))........... ( -28.30) >DroYak_CAF1 6543 120 + 1 GAGCCAUCGAAGGGAAUUUAUAAUUAAUAAAUGCCCCCAAGUGAGGCAGUGAGAACAAGUGCUGAUUAGUGCAAUGACAAAGCAAUCAAAACACUUUGGCAAACGUGGCAAUUAAAAUUC ..((((.((..(((.((((((.....)))))).)))(((((((.((((.(.......).))))(((...(((.........))))))....))).))))....))))))........... ( -27.40) >consensus GAGCCAUCGAAGGGAAUUUAUAAUUAAUAAAUGCCCCCAAGUGAGGCAGUGAGAACAAGUGCUGAUUAGUGCAAUGACAAAGCAAUCAAAACACUUUGGCAAACGUGGCAAUUAAAAUUC ..((((.((..(((.((((((.....)))))).)))(((((((.((((.(.......).))))(((...(((.........))))))....))).))))....))))))........... (-27.40 = -27.40 + 0.00)
Location | 19,143,269 – 19,143,389 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 99.67 |
Mean single sequence MFE | -28.88 |
Consensus MFE | -28.40 |
Energy contribution | -28.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.26 |
Structure conservation index | 0.98 |
SVM decision value | 2.86 |
SVM RNA-class probability | 0.997424 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19143269 120 - 23771897 GAAUUUUAAUUGCCACGUUUGCCAAAGUGUUUUGAUUGCUUUGUCAUUGCACUAAUCAGCACUUGUUCUCACUGCCUCACUUGGGGGCAUUUAUUAAUUAUAAAUUCCCUUCGAUGGCUC ...........((((((....(((((((((..((((......))))..))))).....(((..((....)).))).....))))(((.((((((.....)))))).)))..)).)))).. ( -28.40) >DroSec_CAF1 6182 120 - 1 GAAUUUUAAUUGCCACGUUUGCCAAAGUGUUUUGAUUGCUUUGUCAUUGCACUAAUCAGCACUUGUUCUCACUGCCUCACUUGGGGGCAUUUAUUAAUUAUAAAUUCCCUUCGAUGGCUC ...........((((((....(((((((((..((((......))))..))))).....(((..((....)).))).....))))(((.((((((.....)))))).)))..)).)))).. ( -28.40) >DroSim_CAF1 5752 120 - 1 GAAUUUUAAUUGCCACGUUUGCCAAAGUGUUUUGAUUGCUUUGUCAUUGCACUAAUCAGCACUUGUUCUCACUGCCUCACUUGGGGGCAUUUAUUAAUUAUAAAUUCCCUUCGAUGGCUC ...........((((((....(((((((((..((((......))))..))))).....(((..((....)).))).....))))(((.((((((.....)))))).)))..)).)))).. ( -28.40) >DroEre_CAF1 6637 120 - 1 GAAUUUUAAUUGCCACGUUUGCCAAAGUGUUUUGAUUGCUUUGUCAUUGCACUAAUCAGCACUUGUUCUCACUGCCUCACUUGGGGGCAUUUAUUAAUUAUAAAUUCCCUUCGGUGGCUC ...........(((((.....(((((((((..((((......))))..))))).....(((..((....)).))).....))))(((.((((((.....)))))).)))....))))).. ( -30.80) >DroYak_CAF1 6543 120 - 1 GAAUUUUAAUUGCCACGUUUGCCAAAGUGUUUUGAUUGCUUUGUCAUUGCACUAAUCAGCACUUGUUCUCACUGCCUCACUUGGGGGCAUUUAUUAAUUAUAAAUUCCCUUCGAUGGCUC ...........((((((....(((((((((..((((......))))..))))).....(((..((....)).))).....))))(((.((((((.....)))))).)))..)).)))).. ( -28.40) >consensus GAAUUUUAAUUGCCACGUUUGCCAAAGUGUUUUGAUUGCUUUGUCAUUGCACUAAUCAGCACUUGUUCUCACUGCCUCACUUGGGGGCAUUUAUUAAUUAUAAAUUCCCUUCGAUGGCUC ...........((((((....(((((((((..((((......))))..))))).....(((..((....)).))).....))))(((.((((((.....)))))).)))..)).)))).. (-28.40 = -28.40 + 0.00)
Location | 19,143,309 – 19,143,428 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.50 |
Mean single sequence MFE | -32.48 |
Consensus MFE | -23.83 |
Energy contribution | -23.03 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.10 |
Mean z-score | -2.33 |
Structure conservation index | 0.73 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.852300 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19143309 119 - 23771897 AGAGCUCAGUGCAGUGCUCAGUGCUCAGUGGGCUU-UUGUGAAUUUUAAUUGCCACGUUUGCCAAAGUGUUUUGAUUGCUUUGUCAUUGCACUAAUCAGCACUUGUUCUCACUGCCUCAC .(((..(((((.((.((..((((((.....(((..-.((((............))))...)))..(((((..((((......))))..)))))....)))))).)).))))))).))).. ( -37.00) >DroSec_CAF1 6222 114 - 1 AGGGCUCA-----GUGCUCAGUGCUCAGUGGGCUU-UUGUGAAUUUUAAUUGCCACGUUUGCCAAAGUGUUUUGAUUGCUUUGUCAUUGCACUAAUCAGCACUUGUUCUCACUGCCUCAC .((((..(-----(((..(((((((.....(((..-.((((............))))...)))..(((((..((((......))))..)))))....))))).))....))))))))... ( -32.50) >DroSim_CAF1 5792 114 - 1 AGGGCUCA-----GUGCUCAGUGCUCAGUGGGCUU-UUGUGAAUUUUAAUUGCCACGUUUGCCAAAGUGUUUUGAUUGCUUUGUCAUUGCACUAAUCAGCACUUGUUCUCACUGCCUCAC .((((..(-----(((..(((((((.....(((..-.((((............))))...)))..(((((..((((......))))..)))))....))))).))....))))))))... ( -32.50) >DroEre_CAF1 6677 103 - 1 AGGGG----------------CUCUCAGUGGGCUU-UUGUGAAUUUUAAUUGCCACGUUUGCCAAAGUGUUUUGAUUGCUUUGUCAUUGCACUAAUCAGCACUUGUUCUCACUGCCUCAC .((((----------------(....(((((((..-(((.......)))..)))(((..(((...(((((..((((......))))..))))).....)))..)))...))))))))).. ( -29.70) >DroYak_CAF1 6583 109 - 1 AGGGG--------GUGG---UUUUUCAGUGGGCUUUUUGUGAAUUUUAAUUGCCACGUUUGCCAAAGUGUUUUGAUUGCUUUGUCAUUGCACUAAUCAGCACUUGUUCUCACUGCCUCAC ..(((--------(..(---(....((((((((....((((............))))...)))..(((((..((((......))))..)))))......))).)).....))..)))).. ( -30.70) >consensus AGGGCUCA_____GUGCUCAGUGCUCAGUGGGCUU_UUGUGAAUUUUAAUUGCCACGUUUGCCAAAGUGUUUUGAUUGCUUUGUCAUUGCACUAAUCAGCACUUGUUCUCACUGCCUCAC .((((.................)))).((((((.....((((....(((.(((...(....)...(((((..((((......))))..))))).....))).)))...)))).))).))) (-23.83 = -23.03 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:18 2006