Locus 7077

Sequence ID 3L_DroMel_CAF1
Location 19,140,508 – 19,140,628
Length 120
Max. P 0.992224
window11473

overview

Window 3

Location 19,140,508 – 19,140,628
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.67
Mean single sequence MFE -25.46
Consensus MFE -24.16
Energy contribution -23.96
Covariance contribution -0.20
Combinations/Pair 1.12
Mean z-score -1.75
Structure conservation index 0.95
SVM decision value 2.31
SVM RNA-class probability 0.992224
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19140508 120 + 23771897
AUUAAGUCAAAGUGGGGAAAACCUUAGCCGACAUGAUGGAAUUUCGCCUUACUCUGGAGCAAAUGAAAAAACUUUGCUAAAAUAAAAAUUCAAAAUAUCCGGGAGGGGCGAAAGAUUAAA
((((.(((.....(((.....))).....))).))))....((((((((..(.(((((.....((((......((.....))......)))).....))))))..))))))))....... ( -27.10)
>DroSec_CAF1 3471 120 + 1
AUUAAGUCAAAGUGGGGAAAACCUUAGCCGACAUGAUGGAAUUUCGCCUUACUUCGGGGCAAAUGAAAAAACUUUGCUAAAAUAAAAAUUCAAAAUAGCCGGGAGGGGCGAAAGAUUAAA
((((.(((.....(((.....))).....))).))))....((((((((..((.(((((((((.(......)))))))..(((....)))........)))))..))))))))....... ( -25.70)
>DroSim_CAF1 3041 120 + 1
AUUAAGUCAAAGUGGGGAAAACCUUAGCCGACAUGAUGGAAUUUUGCCUUACUUCGGGGCAAAUGAAAAAACUUUGCUAAAAUAAAAAUUCAAAAUAGCCGGGAGGGGCGAAAGAUUAAA
((((.(((.....(((.....))).....))).))))....((((((((..((.(((((((((.(......)))))))..(((....)))........)))))..))))))))....... ( -23.60)
>DroEre_CAF1 3779 118 + 1
AUUAAGUCAAAGUGGGGAAAACCUUAGCCGACAUGAUGGAAUUUCGCCUUACUCCGGAGCAAAUGAAAAAACUUUGCUAAAAUAAAAAUUCAAAAUAGCCGGG--GGGCGAAAGAUUAAA
((((.(((.....(((.....))).....))).))))....(((((((...((((((((((((.(......)))))))..(((....)))........)))))--))))))))....... ( -27.60)
>DroYak_CAF1 3790 120 + 1
AUUAAGUCAAAGUGGGGAAAACCUUAGCCGACAUGAUGGAAUUUCGCCUUACUCCGAAACAAAUGAAAAAACUUUGCUAAAAUAAAAAUUCAAAAUAGCCGGGAGGGGCGAAAGAUUAAA
((((.(((.....(((.....))).....))).))))....((((((((..(.(((.......(....)......((((................))))))))..))))))))....... ( -23.29)
>consensus
AUUAAGUCAAAGUGGGGAAAACCUUAGCCGACAUGAUGGAAUUUCGCCUUACUCCGGAGCAAAUGAAAAAACUUUGCUAAAAUAAAAAUUCAAAAUAGCCGGGAGGGGCGAAAGAUUAAA
((((.(((.....(((.....))).....))).))))....(((((((((.(.((((((((((.(......)))))))..(((....)))........))))).)))))))))....... (-24.16 = -23.96 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:05 2006