Locus 7075

Sequence ID 3L_DroMel_CAF1
Location 19,138,720 – 19,138,839
Length 119
Max. P 0.815543
window11469

overview

Window 9

Location 19,138,720 – 19,138,839
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 87.87
Mean single sequence MFE -27.43
Consensus MFE -23.51
Energy contribution -23.31
Covariance contribution -0.20
Combinations/Pair 1.09
Mean z-score -1.61
Structure conservation index 0.86
SVM decision value 0.66
SVM RNA-class probability 0.815543
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19138720 119 + 23771897
AUCUGCCCAGGCAUCAGUUCGUCAUCGUGAUUUUCCUGGGUGGUACCGGACCCCCCUCUCACCAUCCCCGAUCCCCAUCAUUU-UCCCUUUGGCUAGGGCCCCCUACCCACCUCUUGUAC
..(..((((((.((((...((....))))))...))))))..)(((.(((...................(((....)))....-......(((.((((....)))).)))..))).))). ( -27.10)
>DroSec_CAF1 1730 119 + 1
AUCUGCCCAGGCAUCAGUUCGUCAUCGUGAUUUUCUUGGGUGGUACCGGACCCUCCUCCCAUCCUCCCCGCUCCCCCUCAUUU-UCCCUUUGGCUAGGGCCCCCUACCCACCUCUUGCCC
.........((((..((.........(((........((((((....((.....))..))))))....)))............-......(((.((((....)))).))).))..)))). ( -24.80)
>DroSim_CAF1 1268 119 + 1
AUCUGCCCAGGCAUCAGUUCGUCAUCGUGAUUUUCCUGGGUGGUACCGGACCCUCCUCCCAUCCUCCCCGCUCCCCCUCAUUU-UCCCUUUGGCUAGGGCCCCCUACCCACCUCUUGCCC
....(((((((.((((...((....))))))...)))))))((((..(((......)))........................-......(((.((((....)))).))).....)))). ( -27.10)
>DroEre_CAF1 1954 113 + 1
AUCUGCCCAGGCAUCAGUUCGUCAUCGUGAUUUUCCUGGGUGGUACCAGGCCCCCC-------CUCCCCGAUUCCCCUCCAUUUUCCCUUUGGCUAGGGCCCCCUACCCCCCUCCAGACC
.((((((((((.((((...((....))))))...)))))).((((...(((((..(-------(.....((.............)).....))...)))))...))))......)))).. ( -28.82)
>DroYak_CAF1 2024 112 + 1
AUCUGCCCAGGCAUCAGUUCGUCAUCGUGAUUUUCCUGGGUGGUACCAGGCCCGCC-------UUCCCUGAUCCCCCUCCAUU-UCCCUUUGGCUAGGGCCCCCUAUCCCCCUCUGGUCC
..(..((((((.((((...((....))))))...))))))..).((((((((((((-------....................-.......)))..))))).............)))).. ( -29.34)
>consensus
AUCUGCCCAGGCAUCAGUUCGUCAUCGUGAUUUUCCUGGGUGGUACCGGACCCCCCUC_CA_CCUCCCCGAUCCCCCUCAUUU_UCCCUUUGGCUAGGGCCCCCUACCCACCUCUUGCCC
..(..((((((.((((...((....))))))...))))))..)...(((..................))).....................((.((((....)))).))........... (-23.51 = -23.31 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:02 2006