Locus 7074

Sequence ID	3L_DroMel_CAF1
Location	19,138,275 – 19,138,395
Length	120
Max. P	0.951504

overview

Window 7

Location	19,138,275 – 19,138,395
Length	120
Sequences	5
Columns	120
Reading direction	forward
Mean pairwise identity	95.38
Mean single sequence MFE	-33.45
Consensus MFE	-30.32
Energy contribution	-30.32
Covariance contribution	0.00
Combinations/Pair	1.00
Mean z-score	-1.55
Structure conservation index	0.91
SVM decision value	1.41
SVM RNA-class probability	0.951504
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19138275 120 + 23771897
GCAAACUGUGAAACAUGAACUCGACUCAGACCCUAACUCCAACUCCCGAGUUGCUCCAAGUUGGAACCCGAUGAUUGACCCACGAAGGAGUUGCGCCCGUUCGUGCCUCAAUCAGUUUGU
(((((((((((..(((((((.((((((..........(((((((...(((...)))..)))))))...((.((.......))))...)))))).....)))))))..)))..)))))))) ( -33.80)
>DroSec_CAF1 1289 115 + 1
GCAAACUGUGAAACAUGAACUCGACUCAGACCCUAACUCCAACUGC-----AGCUCCAAGUUGGAACCCGAUGAUUGACCCACGAAGGAGUUUCGCCCGUUCGUGCCUCAAUCAGUUUGU
(((((((((((..(((((((.(((....((((((...(((((((..-----.......)))))))...((.((.......)))).))).))))))...)))))))..)))..)))))))) ( -32.30)
>DroSim_CAF1 834 115 + 1
GCAAACUGUGAAACAUGAACUCGACUCAGACCCUAACUCCAACUGC-----AGCUCCAAGUUGGAACCCGAUGAUUGACCCACGAAGGAGUUUCGCCUGUUCGUGCCUCAAUCAGUUUGU
(((((((((((..(((((((.(((....((((((...(((((((..-----.......)))))))...((.((.......)))).))).))))))...)))))))..)))..)))))))) ( -33.00)
>DroEre_CAF1 1503 114 + 1
GCAAACUGUGAAACAUGAACUCGACUCGGACGCUAACUCCAACUGC-----AGCUCCAAGUUGGAACCCGAUGAUUGACCCACGAAGGAGUU-CGGCCGUUCGUGCCUCAAUCAGUUUGU
(((((((((((..(((((((.(((((.(((.(((............-----)))))).)))))((((((.................)).)))-)....)))))))..)))..)))))))) ( -34.63)
>DroYak_CAF1 1550 114 + 1
GCAAACUGUGAAACAUGAACUCGACUCAGACCCUAACUCCAACUGC-----AGCUCCAAGUUGGAACCCGAUGAUUGACCCACGAAGGAGUU-CGGCCGUUCGUGCCUCAAUCAGUUUGU
(((((((((((..((((((((((((((..........(((((((..-----.......)))))))...((.((.......))))...))).)-)))..)))))))..)))..)))))))) ( -33.50)
>consensus
GCAAACUGUGAAACAUGAACUCGACUCAGACCCUAACUCCAACUGC_____AGCUCCAAGUUGGAACCCGAUGAUUGACCCACGAAGGAGUU_CGCCCGUUCGUGCCUCAAUCAGUUUGU
(((((((((((..(((((((..(((((..........(((((((..............)))))))...((.((.......))))...)))))......)))))))..)))..)))))))) (-30.32 = -30.32 +   0.00)

alignment

secondary structure

dotplot

Window 8

Location	19,138,275 – 19,138,395
Length	120
Sequences	5
Columns	120
Reading direction	reverse
Mean pairwise identity	95.38
Mean single sequence MFE	-39.82
Consensus MFE	-35.16
Energy contribution	-35.60
Covariance contribution	0.44
Combinations/Pair	1.03
Mean z-score	-1.52
Structure conservation index	0.88
SVM decision value	1.05
SVM RNA-class probability	0.907433
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19138275 120 - 23771897
ACAAACUGAUUGAGGCACGAACGGGCGCAACUCCUUCGUGGGUCAAUCAUCGGGUUCCAACUUGGAGCAACUCGGGAGUUGGAGUUAGGGUCUGAGUCGAGUUCAUGUUUCACAGUUUGC
.(((((((..(((((((.((((.....((((((((((((((.....))).)))(((((.....))))).....))))))))((.((((...)))).))..)))).)))))))))))))). ( -43.30)
>DroSec_CAF1 1289 115 - 1
ACAAACUGAUUGAGGCACGAACGGGCGAAACUCCUUCGUGGGUCAAUCAUCGGGUUCCAACUUGGAGCU-----GCAGUUGGAGUUAGGGUCUGAGUCGAGUUCAUGUUUCACAGUUUGC
.(((((((..(((((((.((((.(((((....(((....)))....)).(((((..(.(((((.((.(.-----...))).))))).)..))))))))..)))).)))))))))))))). ( -38.40)
>DroSim_CAF1 834 115 - 1
ACAAACUGAUUGAGGCACGAACAGGCGAAACUCCUUCGUGGGUCAAUCAUCGGGUUCCAACUUGGAGCU-----GCAGUUGGAGUUAGGGUCUGAGUCGAGUUCAUGUUUCACAGUUUGC
.(((((((..(((((((.((((.(((((....(((....)))....)).(((((..(.(((((.((.(.-----...))).))))).)..))))))))..)))).)))))))))))))). ( -38.20)
>DroEre_CAF1 1503 114 - 1
ACAAACUGAUUGAGGCACGAACGGCCG-AACUCCUUCGUGGGUCAAUCAUCGGGUUCCAACUUGGAGCU-----GCAGUUGGAGUUAGCGUCCGAGUCGAGUUCAUGUUUCACAGUUUGC
.(((((((..(((((((.((((((((.-.((......)).)))).....(((((((((.....))))))-----....((((((....).)))))..))))))).)))))))))))))). ( -39.40)
>DroYak_CAF1 1550 114 - 1
ACAAACUGAUUGAGGCACGAACGGCCG-AACUCCUUCGUGGGUCAAUCAUCGGGUUCCAACUUGGAGCU-----GCAGUUGGAGUUAGGGUCUGAGUCGAGUUCAUGUUUCACAGUUUGC
.(((((((..(((((((.((((((((.-((((((..(((((.....))).))((((((.....))))))-----......))))))..))))........)))).)))))))))))))). ( -39.80)
>consensus
ACAAACUGAUUGAGGCACGAACGGGCG_AACUCCUUCGUGGGUCAAUCAUCGGGUUCCAACUUGGAGCU_____GCAGUUGGAGUUAGGGUCUGAGUCGAGUUCAUGUUUCACAGUUUGC
.(((((((..(((((((.((((.(((.....(((.....))).......(((((..(.(((((.((((......))..)).))))).)..))))))))..)))).)))))))))))))). (-35.16 = -35.60 +   0.44)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:00 2006