| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,136,500 – 19,136,606 |
| Length | 106 |
| Max. P | 0.994991 |
| Location | 19,136,500 – 19,136,606 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 73.44 |
| Mean single sequence MFE | -18.71 |
| Consensus MFE | -6.40 |
| Energy contribution | -7.00 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.34 |
| SVM decision value | 2.53 |
| SVM RNA-class probability | 0.994991 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19136500 106 + 23771897 ACU--CUCCGGGUGACAAAUCUCUGACUGGAUGGAUUGACAGCCACG-UUUC-CUUCCGCUGUCGUUCGUCCUUCUCCCUUACUUUUCUCUCUUUUACCCCCUUUCGACG ...--....((((((((......))...((((((((.((((((....-....-.....))))))))))))))......................)))))).......... ( -24.42) >DroSec_CAF1 23917 102 + 1 ACU--CUCCGGGUGACAAAUCUCUGACUGG----AUUGACAGCCACG-UUUC-CUCCCGCUGUCGUUCGUCCUUCUCCCUUACUUUUCUCUCUUUUACCCCCUUUCACCA ...--....((((((((......))...((----(((((((((....-....-.....)))))))...))))......................)))))).......... ( -18.42) >DroSim_CAF1 24867 97 + 1 -------CCGGGUGACAAAUCUCUGACUGG----AUUGACAGCCACG-UUUC-CUCCCGCUGUCGCUCGUCCUUCUCCCUUACUUUUCUCUCUUUAACCCCCUUUCACCA -------...(((((((......))...((----(((((((((....-....-.....)))))))...))))................................))))). ( -17.92) >DroEre_CAF1 17413 89 + 1 ACUCUCUCCGGGUGACAAAUCUCUGACUGG----AUUGACAGCCACG-CUUC-CUCUCGCUGCUGUUCGUCCUUC---------------UCUUUUACCCCCUCUCCCCA .........((((((((......))...((----((.((((((...(-(...-.....)).)))))).))))...---------------....)))))).......... ( -20.80) >DroAna_CAF1 22357 94 + 1 ACUCUCUCUGGGUGACAAAUCCCUGACUAG----AUUGACGGCUACUGUUUCCCUCCCACU--------UCCCACUCCCAGACACCCUGCUCAUUU----CCUCUCCCUG ......((((((.(...((((........)----)))(((((...)))))...........--------.....).))))))..............----.......... ( -12.00) >consensus ACU__CUCCGGGUGACAAAUCUCUGACUGG____AUUGACAGCCACG_UUUC_CUCCCGCUGUCGUUCGUCCUUCUCCCUUACUUUUCUCUCUUUUACCCCCUUUCACCA .......((((..((......))...)))).......((((((...............)))))).............................................. ( -6.40 = -7.00 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:55 2006