Locus 7070

Sequence ID 3L_DroMel_CAF1
Location 19,135,198 – 19,135,299
Length 101
Max. P 0.567650
window11459

overview

Window 9

Location 19,135,198 – 19,135,299
Length 101
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 82.47
Mean single sequence MFE -34.80
Consensus MFE -20.51
Energy contribution -20.98
Covariance contribution 0.48
Combinations/Pair 1.23
Mean z-score -2.20
Structure conservation index 0.59
SVM decision value 0.07
SVM RNA-class probability 0.567650
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19135198 101 - 23771897
UUAUAUGUGUGUCUGUGUAUCCGUCAGAUACUUGCU------GUAUCCGUGUGU-GCCUGCAUCUCCAGGUGUUC-------GUGCGCCAGUG----UGAGUGUUUGAUGUAAGCAGAC
..........((((((.....(((((((((((..(.------....(.(.(((.-.(..(((((....)))))..-------)..)))).).)----..)))))))))))...)))))) ( -35.70)
>DroSec_CAF1 22643 101 - 1
UUAUAUGUACAUCUGUGUAUCCGUCAGAUACUUGCU------GUAUCCGUGUGU-GCCUGCAUCUCCAGGUGUUC-------GUGAGCCAGUG----UGAGUGUUUGAUGUAAGCAGAC
...........(((((.....(((((((((((((((------(..((((...(.-.((((......))))..).)-------).))..)))).----.))))))))))))...))))). ( -34.50)
>DroSim_CAF1 23570 101 - 1
UUAUAUGUACAUCUGUGUAUCCGUCAGAUACUUGCU------GUAUCCGUGUGU-GCCUGCAUCUCCAGGUGUUC-------GUGCGCCAGUG----UGAGUGUUUGAUGUAAGCAGAC
...........(((((.....(((((((((((..(.------....(.(.(((.-.(..(((((....)))))..-------)..)))).).)----..)))))))))))...))))). ( -33.80)
>DroEre_CAF1 16162 104 - 1
UUUUAUGUACAUCUGUGUAUCCGUCAGAUACUUGCUGU---GAUAUCCGUGUGU-GCCUGCAUCUCCAGGUGUUC-------GUGCACCAGUG----UGAGUGUUUGAUGUAAGCAGAC
...........(((((.....(((((((((((..(..(---(........(((.-.(..(((((....)))))..-------)..)))))..)----..)))))))))))...))))). ( -33.60)
>DroYak_CAF1 20799 104 - 1
UUAUAAGUACAUCUGUGUAUCCGUCAGAUACUUGCGGC---UGUAUCCGUGUGU-GCCUGCAUCUCCAGGUGUUC-------GUGCAACAGUG----UGAGUGUUUGAUGUAAGCAGAC
...........(((((.....(((((((((((..((.(---(((..(((...(.-.((((......))))..).)-------).)..))))))----..)))))))))))...))))). ( -36.50)
>DroAna_CAF1 20974 110 - 1
CUGUGU---------UGUAUCCACCAGAUACUCCCAUCCAGAGUAUCUGUGUGCCGCUUGCAUCUCCAGGUGCUCCCCCUGAGUGUGUGUGUGUGUCAGAGUGUUUGAUGUAAGCAGAC
((((.(---------((((((((((((((((((.......))))))))).))).(((((((((..(((.(..(((.....)))..).)).).))))..)))))...))))))))))).. ( -34.70)
>consensus
UUAUAUGUACAUCUGUGUAUCCGUCAGAUACUUGCU______GUAUCCGUGUGU_GCCUGCAUCUCCAGGUGUUC_______GUGCGCCAGUG____UGAGUGUUUGAUGUAAGCAGAC
...........(((((.....((((((((((((...............((((.......)))).....(((((...........))))).........))))))))))))...))))). (-20.51 = -20.98 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:52 2006