Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,117,735 – 2,117,826 |
Length | 91 |
Max. P | 0.651106 |
Location | 2,117,735 – 2,117,826 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 73.93 |
Mean single sequence MFE | -20.85 |
Consensus MFE | -13.66 |
Energy contribution | -13.13 |
Covariance contribution | -0.53 |
Combinations/Pair | 1.39 |
Mean z-score | -1.15 |
Structure conservation index | 0.66 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.651106 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2117735 91 - 23771897 UUCUUUUU--------------------CGUAAUGCUAUAUGUUUUUACUUUAGCUCUGGAACCCACAGAGUUACCCAGUUUCAAGGUUCCCCUUUCGAAUGCCAUGGCUC ........--------------------......(((((............((((((((.......))))))))....((((.((((....))))..))))...))))).. ( -16.90) >DroSec_CAF1 170110 109 - 1 UGCUUCUUCAAUUGCU-UAACAAUAAAUCUUAAUACUAUAUCU-UUUACUUUAGCUCUGGAACCCACAGAGCUACCCAGUUUCAAGGUUCCCCUUUCGAAUGCCAUGGCUC ......(((.((((..-...))))...............((((-(..(((.((((((((.......))))))))...)))...))))).........))).((....)).. ( -17.80) >DroSim_CAF1 171431 109 - 1 UUCGUCUUUGAUUGCU-UAACAAUAACGCGUAAUACUGUAUCU-UUUACUUUAGCUCUGGAACCCACAGAGCUACCCAGUUUCAAGGUUCCCCUUUCGAAUGCCAUGGCUC ((((.((((((..(((-............((((..........-.))))..((((((((.......))))))))...))).)))))).........)))).((....)).. ( -21.50) >DroEre_CAF1 174486 109 - 1 UUCCACUUCUAUUGCU-UAAAUACAAUUCGUCAAAAUUUAUCU-CGUCUUGUAGCUCUGGAACCCACAGAGUUGCCCAGUUUCAAGGUUCCCCUUUCAAAUGCCAUGGCGC ................-...........(((((..........-......(((((((((.......)))))))))...((((.((((....))))..))))....))))). ( -19.60) >DroYak_CAF1 167421 109 - 1 UUGUACUUCAGAUGCU-UAAAUAUAAUUCGUAAUACUUUAUCU-CAUCUUCCAGCUCUGGAACCUACAGAGCUACCCAGUUUCAAGGUUCCCCUUUCAAAUGCCAUGGCGC .........(((((..-(((((((........))).))))...-)))))...(((((((.......))))))).....((((.((((....))))..))))((....)).. ( -18.60) >DroAna_CAF1 170671 106 - 1 UAGUACUUGUGGCACUCUGAGACUA---AGUAACUCU-UCCCU-AUUCCUCCAGCUUUGGAGCCCACUGAGUUGCCCAGCUUCAAGGUGCCUCUGUCAAACGCCAUGGCCC ..(.((..(.(((((..(((..((.---.(((((((.-.....-....((((......))))......)))))))..))..)))..))))).).)))....((....)).. ( -30.69) >consensus UUCUACUUCAAUUGCU_UAAAAAUAA_UCGUAAUACUAUAUCU_UUUACUUUAGCUCUGGAACCCACAGAGCUACCCAGUUUCAAGGUUCCCCUUUCAAAUGCCAUGGCUC ...................................................((((((((.......))))))))....((((.((((....))))..))))((....)).. (-13.66 = -13.13 + -0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:03 2006