| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,126,616 – 19,126,706 |
| Length | 90 |
| Max. P | 0.886848 |
| Location | 19,126,616 – 19,126,706 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 73.95 |
| Mean single sequence MFE | -13.50 |
| Consensus MFE | -5.78 |
| Energy contribution | -7.60 |
| Covariance contribution | 1.82 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.43 |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.886848 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19126616 90 - 23771897 --UUUAAUAAGAAAUAACAAAAAAAAAACACAAAAAUGUUGGAGGGAGUGAAAAAAGUUAAUUAAAUUGUAAGCGAGUGGCUGCCUCCUCCA --..................................((..(((((.(((.(.....(((.((......)).)))...).))).)))))..)) ( -15.30) >DroSec_CAF1 14086 70 - 1 --UUUAAUAAGAAAUAAA--------------AAAAUGGUGGAGGGAGUGAAAAAAGUUAAUUAAAUUGUAAGCGAG------CCUCCUCCA --................--------------....(((.(((((..((......((((.....))))....))...------))))).))) ( -13.00) >DroSim_CAF1 14961 77 - 1 --UUUAAUAAGAAAUAAAA-------------AAAAUGGUGGAGGGAGUGAAAAAAGUUAAUUAAAUUGUAAGCGAGUGGCUGCCUCCUCCA --.................-------------....(((.(((((.(((.(.....(((.((......)).)))...).))).))))).))) ( -19.00) >DroEre_CAF1 7586 75 - 1 --UUUAAUAAGAAAUAAA---------------AAAGGAUGGAGGGAGUGAAAAAAGUUAAUUAAAUUGUAAGCGAGUGGCUGCCUCCUCCA --................---------------...(((.(((((.(((.(.....(((.((......)).)))...).))).)))))))). ( -19.40) >DroYak_CAF1 12530 75 - 1 --UUUAAUAAGGAAUAAA---------------AAAAGAUGGUGGGAGUGAAAAAAGUUAAUUAAAUUGUAAGCGAGUGGCUGCCUCCUCCA --........(((.....---------------.......((.((.(((.(.....(((.((......)).)))...).))).)).))))). ( -11.30) >DroAna_CAF1 13668 71 - 1 UCUUUAAUAAGAAUC-GGAGGAAAACAACA--AAAAAAAUCG----AG--UAAAAAGUUAAUUAAAUUGUAAGUGAGCAG------------ ((((..((....)).-.)))).........--.......(((----..--((...((((.....)))).))..)))....------------ ( -3.00) >consensus __UUUAAUAAGAAAUAAA______________AAAAUGAUGGAGGGAGUGAAAAAAGUUAAUUAAAUUGUAAGCGAGUGGCUGCCUCCUCCA ........................................(((((.(((.(.....(((.((......)).)))...).))).))))).... ( -5.78 = -7.60 + 1.82)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:44 2006