Locus 7065

Sequence ID 3L_DroMel_CAF1
Location 19,124,963 – 19,125,080
Length 117
Max. P 0.995316
window11450

overview

Window 0

Location 19,124,963 – 19,125,080
Length 117
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 87.68
Mean single sequence MFE -27.32
Consensus MFE -27.72
Energy contribution -26.84
Covariance contribution -0.88
Combinations/Pair 1.15
Mean z-score -1.89
Structure conservation index 1.01
SVM decision value 2.56
SVM RNA-class probability 0.995316
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19124963 117 - 23771897
AACGAGCUGUUGACUUCUUUCUGCUUUUGCCGGCAGUUGAGUUGCCAAGUUCUUCAGUUCGACUCUCCUUCUUCUUUAUAUCCCUGCACAGUCUUCAUCAUCAUCUGGCUGCCAGCU
..(((((((..(((((......((....)).(((((.....))))))))))...)))))))......................(((..(((((.............))))).))).. ( -26.12)
>DroSec_CAF1 12435 102 - 1
AACGAGCUGUUGACUUCUUUCUGCUUUUGCCGGCAGUUGAGUUGCCAAGUUCUUUAGUUCGACUCUC---------------CCUGCACAGUCUUCAUCAUCAUCUGGCUGCCAGCU
..(((((((..(((((......((....)).(((((.....)))))))).))..)))))))......---------------.(((..(((((.............))))).))).. ( -24.52)
>DroSim_CAF1 13350 102 - 1
AACGAGCUGUUGACUUCUUUCUGCUUUUGCCGGCAGUUGAGUUGCCAAGUUCUUUAGUUCGACUCUC---------------CCUGCACAGUCUUCAUCAUCAUCUGGCUGCCAGCU
..(((((((..(((((......((....)).(((((.....)))))))).))..)))))))......---------------.(((..(((((.............))))).))).. ( -24.52)
>DroEre_CAF1 5884 108 - 1
AACGAGCUGUUGACUUCUUUCUGCUUUUGCCGGCAGUUGAGUUGCCAAGUUCUUCAGCUCGACUC--CUUCU-------CUCCCUGCACAGCCUUCAUCAUCAUCUGGCUGCCAGCU
..(((((((..(((((......((....)).(((((.....))))))))))...)))))))....--.....-------....(((..(((((.............))))).))).. ( -31.22)
>DroYak_CAF1 10876 114 - 1
AACGAGCUGUUGACUUCUUUCUGCUUUUGCCGGCAGUUGAGUUGCCAAGUUCUUCAGCUCGACUC--CUUCUUUCC-UUCUCUCUGCUUAGCCGUCAUCAUCAUCUGGCUGCCAGCU
..(((((((..(((((......((....)).(((((.....))))))))))...)))))))....--.........-........(((((((((...........))))))..))). ( -30.20)
>consensus
AACGAGCUGUUGACUUCUUUCUGCUUUUGCCGGCAGUUGAGUUGCCAAGUUCUUCAGUUCGACUCUCCUUCU________UCCCUGCACAGUCUUCAUCAUCAUCUGGCUGCCAGCU
..(((((((..(((((......((....)).(((((.....))))))))))...)))))))......................(((..(((((.............))))).))).. (-27.72 = -26.84 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:43 2006