Locus 7064

Sequence ID 3L_DroMel_CAF1
Location 19,123,877 – 19,123,968
Length 91
Max. P 0.609513
window11449

overview

Window 9

Location 19,123,877 – 19,123,968
Length 91
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 79.83
Mean single sequence MFE -25.88
Consensus MFE -17.27
Energy contribution -18.27
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.36
Structure conservation index 0.67
SVM decision value 0.15
SVM RNA-class probability 0.609513
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19123877 91 + 23771897
--GCCGACGUGCCAUAAAAGUUGAGUUCAAUCGAAUUGAAU--CAGGGGCAAUUUUGUGAGACCGAAAGGUGCAAACUGAUUUGGGCA------------------AAGUUCG---
--..(((..((((..........(((((....)))))((((--(((..(((.(((((......)))))..)))...))))))).))))------------------....)))--- ( -23.40)
>DroSec_CAF1 11337 91 + 1
--GCCGACGUGCCAUAAAAGUUGAGUUCAAUCGAAUUGAAU--CAGGGGCAAUUUUGUGAGACCGAAAGGUGCAAACUGAUUUGGGCA------------------AAGUUCG---
--..(((..((((..........(((((....)))))((((--(((..(((.(((((......)))))..)))...))))))).))))------------------....)))--- ( -23.40)
>DroSim_CAF1 12274 92 + 1
--GCCGACGUGCCAUAAAAGUUGAGUUCAAUCGAAUUGAAU--CAGGGGCAAUUUUGGGAGACCGAAAGGUGCAAACUGAUUUGGGAAA-----------------AAGUUCG---
--..((((.(.((..........(((((....)))))((((--(((..(((.((((((....))))))..)))...))))))))).)..-----------------..).)))--- ( -26.30)
>DroEre_CAF1 4828 106 + 1
--GCCGACGUGCCAUAAAAGUUGAGUUCAAUCGAAUUGAAU--CAGGGGCAAUU--GUGGGACCGAAAGGUGCAAACUGAUUUGGGCAAAUGAUUCGGUUUAACC-AAGUUCG---
--.((.((.((((......(((.(((((....))))).)))--....))))...--)).))(((....))).......(((((((..((((......))))..))-)))))..--- ( -28.20)
>DroYak_CAF1 9792 109 + 1
--GCCGACGUGCCAUAAAAGUUGAGUUCAAUCGAAUUGAAUUACAGGGGCAAUU--GUGGGACCGAAAGGUGCAAACUGAUUUGGGCAAACGAUUCUGUUUAACCGAAGUUCU---
--.((.((.((((.....((((.(((((....))))).)))).....))))...--)).))(((....))).........(((((..(((((....)))))..))))).....--- ( -30.10)
>DroAna_CAF1 11159 82 + 1
AUGCCGACGUGCCAGA-AAGUUGAGUUCAAUUGAAUCGAAU--CAGGGGCAAUU--G---------GAGGUGCAAACUGAUUUGGCCAG--------------------UUAGCCC
..((..((..((((((-.((((...((((((((..((....--..))..)))))--)---------))......))))..))))))..)--------------------)..)).. ( -23.90)
>consensus
__GCCGACGUGCCAUAAAAGUUGAGUUCAAUCGAAUUGAAU__CAGGGGCAAUU__GUGAGACCGAAAGGUGCAAACUGAUUUGGGCAA_________________AAGUUCG___
..(((....((((......(((.(((((....))))).)))......))))..........(((....))).............)))............................. (-17.27 = -18.27 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:42 2006