Locus 7063

Sequence ID 3L_DroMel_CAF1
Location 19,123,693 – 19,123,794
Length 101
Max. P 0.781363
window11448

overview

Window 8

Location 19,123,693 – 19,123,794
Length 101
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 71.76
Mean single sequence MFE -26.65
Consensus MFE -15.96
Energy contribution -18.18
Covariance contribution 2.22
Combinations/Pair 1.06
Mean z-score -1.43
Structure conservation index 0.60
SVM decision value 0.56
SVM RNA-class probability 0.781363
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19123693 101 + 23771897
AUGAGCUGGGCUGAUGUGCCACUCCAGUCCGCUCUAACCACACCAGCCCCCCCUCAGCCACUCAACGGGUGGUUC-----CACUGUGGCCCUGCCUUCCACCACCU
.((((..((((((.((((.......((....)).....)))).))))))...))))..........(((((((..-----......(((...)))....))))))) ( -30.00)
>DroSec_CAF1 11168 86 + 1
AUGAGCUGGGCUGAUGUGCCACUCCAGUCCGCUCCAUC-----------CUCCCCAGCCACUCAACGGGUGGUUCGGUUCCACUGUGGCCCUGCCC---------U
.......((((....(.(((((......(((..(((((-----------(................))))))..))).......))))).).))))---------. ( -29.31)
>DroSim_CAF1 12110 81 + 1
AUGAGCUGGGCUGAUGUGCCACUCCAGCCCGCUCCAUC-----------CUCCCCAGCCACUCAACGGGUGGUUC-----ACCUGUGGCCCUGCCC---------U
..((((.((((((..(.....)..))))))))))....-----------.......(((((.....(((((...)-----))))))))).......---------. ( -29.00)
>DroEre_CAF1 4688 78 + 1
AUGAGCUGGGCUGAUGUGCCACUCCAGUCCGCUCCAGC-----------CUCCU---CCACUCAACGGGUGGUUC-----CACUGUGGCCCUGCCC---------U
..((((.((((((..(.....)..))))))))))....-----------.....---.........(((..(..(-----(.....))..)..)))---------. ( -26.80)
>DroYak_CAF1 9652 78 + 1
AUGAACUGGGCUGAUGUGGCACUCCAGUCCGCUCCAGC-----------CUCCU---CCACUCAACGGGUGGUUU-----CACUGUGGGCCUGCCC---------U
.((((..((((((..((((.((....))))))..))))-----------))...---(((((.....))))).))-----))....(((....)))---------. ( -29.00)
>DroAna_CAF1 11006 81 + 1
AU----------GAUGUACCACUCCAGAAUGCUGCCUCCGCCCUCCUCCCCCACCAGCCACUCGACGGGUGGUUC-----AAAUGUU-CUGUAUCU---------U
..----------............((((((..(....((((((((..................)).))))))...-----.)..)))-))).....---------. ( -15.77)
>consensus
AUGAGCUGGGCUGAUGUGCCACUCCAGUCCGCUCCAUC___________CUCCCCAGCCACUCAACGGGUGGUUC_____CACUGUGGCCCUGCCC_________U
..((((.((((((..(.....)..)))))))))).....................(((((((.....)))))))................................ (-15.96 = -18.18 +   2.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:41 2006