Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,122,737 – 19,122,844 |
Length | 107 |
Max. P | 0.789882 |
Location | 19,122,737 – 19,122,844 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 82.88 |
Mean single sequence MFE | -25.59 |
Consensus MFE | -15.26 |
Energy contribution | -17.58 |
Covariance contribution | 2.32 |
Combinations/Pair | 1.15 |
Mean z-score | -2.27 |
Structure conservation index | 0.60 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.789882 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19122737 107 + 23771897 UAAACACAGAUGGAAAACGAUUCCGUAUGCAGAUAAAACUGAAAAACUGAUUUGAAAUUUAGAAAAUAAAACCCUGUGUUGGGUUUUGUUUUGC-GGAG----GACUGCAAC .........((((((.....)))))).(((((..............((((........))))((((((((((((......))))))))))))..-....----..))))).. ( -27.30) >DroSec_CAF1 10216 111 + 1 UAAACGCAGAUGGAAAACGAUUCCGUUUGCAGAUGAAACUAAAAAACUGAUUUGAAAUUUAGAAAAUACAACCCUGUGUUGGGUUUUGUUUUGC-AGGGAACUGACUGCAAC .....((((((((((.....))))))))))................((((........))))((((((.(((((......))))).))))))((-((........))))... ( -31.40) >DroSim_CAF1 11176 97 + 1 UAAACGCAAAUGGAAAACGAUUCCGUGCGCAGAUAAAACUGAAAAACUGAUUUGAAAUUUAGAAAAUAAAGCCCUGUG----------UUUUGC-AGAG----GACUGCCAC .....(((...((((.....)))).)))((((..............((((........))))..........(((.((----------.....)-).))----).))))... ( -19.60) >DroEre_CAF1 3687 107 + 1 UAAACGCAGAUGGAAAACGAUUUCGUGAGCAGAUAAAACUGAAAAACUGAUACGAAAUUUAGA-AAUAAAGCCUUGUGAUGGGCUUUGUUUCACUAGGG----GACUGUAGC .....((((.........(((((((((..(((..............))).)))))))))..((-((((((((((......)))))))))))).......----..))))... ( -28.94) >DroYak_CAF1 8651 107 + 1 UAAACGCAGAUGGAAAACGAUACCGUGAGCAGAUAAAACUGAAAAACUGAGUUAGAAUUUAGA-AAUAAAACCUUGUGUUGGGUUUUGAUUUGCCAGAG----GACUGAAAC ......(((.((.....))...((.((.((((((............((((((....)))))).-..((((((((......))))))))))))))))..)----).))).... ( -20.70) >consensus UAAACGCAGAUGGAAAACGAUUCCGUGAGCAGAUAAAACUGAAAAACUGAUUUGAAAUUUAGAAAAUAAAACCCUGUGUUGGGUUUUGUUUUGC_AGAG____GACUGCAAC .........((((((.....))))))..((((..............((((........))))((((((((((((......)))))))))))).............))))... (-15.26 = -17.58 + 2.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:40 2006