Locus 7060

Sequence ID 3L_DroMel_CAF1
Location 19,118,858 – 19,118,950
Length 92
Max. P 0.727291
window11444

overview

Window 4

Location 19,118,858 – 19,118,950
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 91.63
Mean single sequence MFE -26.78
Consensus MFE -20.34
Energy contribution -21.82
Covariance contribution 1.48
Combinations/Pair 1.04
Mean z-score -1.83
Structure conservation index 0.76
SVM decision value 0.41
SVM RNA-class probability 0.727291
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19118858 92 - 23771897
CGCCGGCAGUUGGCUGGUUAUUUUUUACUGCGGUUCCCUUUAAUUGCCGUAAAAAUAAAACAGCCACCACAGACAGCGCGACGACAGUCGUA
.((.(...((((((((.....(((((((.((((((......)))))).))))))).....))))))..))...).))(((((....))))). ( -29.60)
>DroSec_CAF1 6443 92 - 1
CGCCGGCAGUUGGUUGGUUAUUUUUUACUGCGGUUCCCUUUAAUUGCCGUAAAAAUAAAACAGCCACCACAGACAGCGCGACGACAGUCGUA
.((.(...((((((((.....(((((((.((((((......)))))).))))))).....))))))..))...).))(((((....))))). ( -27.20)
>DroSim_CAF1 7381 92 - 1
CGCCGGCAGUUGGUUGGUUAUUUUUUACUGCGGUUCCCUUUAAUUGCCGUAAAAAUAAAACAGCCACCACAGACAGCGCGACGACAGUCGUA
.((.(...((((((((.....(((((((.((((((......)))))).))))))).....))))))..))...).))(((((....))))). ( -27.20)
>DroYak_CAF1 4756 92 - 1
CGCCGGCAGUUGGUUGGUUAUUUUUUACUGCGGUUCCCUUUAAUUGCCGUAAAAAUAAAACAGCCACCACAGACAACGCGACGACAGUCGUA
....((....((((((.....(((((((.((((((......)))))).))))))).....)))))))).........(((((....))))). ( -25.90)
>DroAna_CAF1 6574 85 - 1
CGCCGGCAGUUG----GUUAUUUUUUACUGCGGUUCCCUUUAAUUGCCAUAAAAAUGAAAGAGCCACCGGAGACCAACCGGCGACAGAC---
((((((...(((----((.........((.((((..(((((.(((........))).)))).)..)))).)))))))))))))......--- ( -24.00)
>consensus
CGCCGGCAGUUGGUUGGUUAUUUUUUACUGCGGUUCCCUUUAAUUGCCGUAAAAAUAAAACAGCCACCACAGACAGCGCGACGACAGUCGUA
....((....((((((.....(((((((.((((((......)))))).))))))).....)))))))).........(((((....))))). (-20.34 = -21.82 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:37 2006