Locus 7059

Sequence ID 3L_DroMel_CAF1
Location 19,117,368 – 19,117,481
Length 113
Max. P 0.520462
window11443

overview

Window 3

Location 19,117,368 – 19,117,481
Length 113
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 86.70
Mean single sequence MFE -32.88
Consensus MFE -22.49
Energy contribution -24.18
Covariance contribution 1.69
Combinations/Pair 1.11
Mean z-score -1.48
Structure conservation index 0.68
SVM decision value -0.03
SVM RNA-class probability 0.520462
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19117368 113 + 23771897
UGUCGUUGUCCUUGUUUGUGCUGA-AACUCUUACUGCGGACUAAAUGACACCGCAGAAAGCGAGUGGAACGGCAAAAAGGACAAA--GUCAGAGGGGUGGCAUUGCACUGAAA----CGA
..(((((((((((.....(((((.-.((((...((((((...........)))))).....))))....)))))..))))))...--.((((.(.(((...))).).))))))----))) ( -34.20)
>DroSec_CAF1 4929 113 + 1
UGUCGUUGUCCUUGUUUGUGCUGA-AACUCUUACUGCGGACUAAAUGACACCGCAGAAAGCGAGUGGAACGGCAAAAAGGACAAA--UGCAGAGGGGUUGCAUUGCACUGAAA----CGA
..(((((((((((.....(((((.-.((((...((((((...........)))))).....))))....)))))..)))))).((--(((((.....))))))).......))----))) ( -36.20)
>DroSim_CAF1 5856 113 + 1
UGUCGUUGUCCUUGUUUGUGCUGA-AACUCUUACUGCGGACUAAAUGACACCGCAGAAAGCGAGUGGAACGGCAAAAAGGACAAA--UGCAGAGGGGUGGCAUUGCACUGAAA----CGA
(((..((((((((.....(((((.-.((((...((((((...........)))))).....))))....)))))..)))))))).--.)))....((((......))))....----... ( -34.30)
>DroAna_CAF1 5059 118 + 1
UGUGUUU--UUUUUUUUUUGCUAAAAACUCUUACUGCGGACUAAAUGACACCGCAGAAAACAACUGGAACAGCCAAAAGGACAUACAGCCCGAGGGGUGGCAUUGCACAGGAAGAUAAAA
..(((((--((((.....(((((....(((((.((((((...........)))))).......(((......((....)).....)))...))))).)))))......)))))))))... ( -26.80)
>consensus
UGUCGUUGUCCUUGUUUGUGCUGA_AACUCUUACUGCGGACUAAAUGACACCGCAGAAAGCGAGUGGAACGGCAAAAAGGACAAA__GGCAGAGGGGUGGCAUUGCACUGAAA____CGA
.....((((((((.....(((((...((((...((((((...........)))))).....))))....)))))..))))))))...........((((......))))........... (-22.49 = -24.18 +   1.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:36 2006