Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,116,864 – 19,116,973 |
Length | 109 |
Max. P | 0.553614 |
Location | 19,116,864 – 19,116,973 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 84.36 |
Mean single sequence MFE | -24.05 |
Consensus MFE | -17.17 |
Energy contribution | -17.23 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.11 |
Mean z-score | -1.50 |
Structure conservation index | 0.71 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.553614 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19116864 109 - 23771897 GAUGGACCACAUGCACAAACAAUUUGCAUUCUGCUAAAACUUU--CACAAAGCAACAAAAGCAGCCGAACAUCAAAGGGCAAAACCGUAGGAAAGAGUGCUUCAAGUCCGU-------- .((((((.....((((.........((.....)).....((((--(.....((.......)).(((...........)))..........))))).)))).....))))))-------- ( -24.10) >DroSec_CAF1 4421 109 - 1 GAUGGGCCACAUGCACAAACAAUUUGCAUUCUGCUAAAACUUU--CACAAAGCAACAAAAGCAGCCGAACAUCAAAGGGCAAAACCGUAGGAAAGAGUGCUUCAAGCCCGC-------- ...((((.....((((.........((.....)).....((((--(.....((.......)).(((...........)))..........))))).)))).....))))..-------- ( -25.20) >DroSim_CAF1 5352 109 - 1 GAUGGGCCACAUGCACAAACAAUUUGCAUUCUGCUAAAACUUU--CACAAAGCAACAAAAGCAGCCGAACAUCAAAGGGCAAAACCGUAGGAAAGAGUGCUUCAAGCCCGC-------- ...((((.....((((.........((.....)).....((((--(.....((.......)).(((...........)))..........))))).)))).....))))..-------- ( -25.20) >DroAna_CAF1 4512 110 - 1 GAUGGGCCACAUGCACAAACAAUUUGCGUUUUGCUGAAAACUUCCCACAAAGCAACAAAAGCAGCCAAACAUCAAAGGAU---------GCAGAGGGUGCUCCAAGACCCCAACUUGCC ..((((......((((......(((((((((.((((.........(.....).........)))).))))(((....)))---------)))))..))))........))))....... ( -21.71) >consensus GAUGGGCCACAUGCACAAACAAUUUGCAUUCUGCUAAAACUUU__CACAAAGCAACAAAAGCAGCCGAACAUCAAAGGGCAAAACCGUAGGAAAGAGUGCUUCAAGCCCGC________ ...((((.....((((........(((....((((...............))))......)))(((...........)))................)))).....)))).......... (-17.17 = -17.23 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:35 2006