Locus 7057

Sequence ID 3L_DroMel_CAF1
Location 19,116,616 – 19,116,712
Length 96
Max. P 0.898838
window11441

overview

Window 1

Location 19,116,616 – 19,116,712
Length 96
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 73.11
Mean single sequence MFE -24.48
Consensus MFE -12.48
Energy contribution -13.22
Covariance contribution 0.75
Combinations/Pair 1.19
Mean z-score -2.17
Structure conservation index 0.51
SVM decision value 1.00
SVM RNA-class probability 0.898838
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19116616 96 - 23771897
-------AAGCUCCUCGGGGAAAAGCUCGUAGGAGACCU----C--CUGCUAAACCCCCUUUUCACCAUUUUCCCCAUUUUCCGCAGCCCUUUUUGCCGU--UUUCCCCAU
-------.........((((((((....((((((....)----)--)))).................................((((......))))..)--))))))).. ( -23.30)
>DroSec_CAF1 4179 96 - 1
-------AAGCUCCUCGGGGAAAAGCUCGUAGGAGAGCU----C--CUGCAAAACCCCCUUUUCACCAUUUUCCCCGUUUUCCGCAGCCCUUUUUGCCGU--UUUCCCCAU
-------.........((((((((....((((((....)----)--)))).................................((((......))))..)--))))))).. ( -23.80)
>DroSim_CAF1 5101 96 - 1
-------AAGCUCCUCGGGGAAAAGCUCGUAGGAGAGCU----C--CUGCGAAACCCCCUUUUCCCCAUUUUCCCCGUUUUCCGCAGCCCUUUUUGCCGU--UUUCCCCAU
-------((((.....(((((((((.((((((((....)----)--))))))......)))))))))................((((......)))).))--))....... ( -27.90)
>DroAna_CAF1 4196 101 - 1
CAAGCCAAAGCUCCUGGGGAACAGUCUCACAGGAGACCUAGCUCGUCAGCCACGCCCCCCUGC----------GCCUGCCUUAGCCGCCCCCUUUGUCGUCAUUUUCGCAU
...(.(((((((((((((((....)))).)))))).....(((.(.(((...(((......))----------).))).)..)))......))))).)............. ( -22.90)
>consensus
_______AAGCUCCUCGGGGAAAAGCUCGUAGGAGACCU____C__CUGCAAAACCCCCUUUUCACCAUUUUCCCCGUUUUCCGCAGCCCUUUUUGCCGU__UUUCCCCAU
................((((((((((((......)))))............................................((((......)))).....))))))).. (-12.48 = -13.22 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:34 2006