| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,115,877 – 19,115,982 |
| Length | 105 |
| Max. P | 0.812360 |
| Location | 19,115,877 – 19,115,982 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 99.37 |
| Mean single sequence MFE | -28.57 |
| Consensus MFE | -28.70 |
| Energy contribution | -28.70 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.72 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.812360 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19115877 105 - 23771897 AUUUGGAGCCGUUUUGUAUGAAGACCUCUUCUUUGACGGGGCUUUUUUGCCUUUGAUUGAUUGAUUGCCCCCAUCGAGGCGAUAAGUUAUCGAUUAGCAUUCUCU ....(((((((((......((((....))))...)))))(((......))).(((((((((..((((((........)))))).....)))))))))....)))) ( -28.70) >DroSec_CAF1 3458 104 - 1 AUUUGGAGCCGUUUUGUAUGAAGACCUCUUCU-UGACGGGGCUUUUUUGCCUUUGAUUGAUUGAUUGCCCCCAUCGAGGCGAUAAGUUAUCGAUUAGCAUUCUCU ....(((((((((......((((....)))).-.)))))(((......))).(((((((((..((((((........)))))).....)))))))))....)))) ( -28.30) >DroSim_CAF1 4380 105 - 1 AUUUGGAGCCGUUUUGUAUGAAGACCUCUUCUUUGACGGGGCUUUUUUGCCUUUGAUUGAUUGAUUGCCCCCAUCGAGGCGAUAAGUUAUCGAUUAGCAUUCUCU ....(((((((((......((((....))))...)))))(((......))).(((((((((..((((((........)))))).....)))))))))....)))) ( -28.70) >consensus AUUUGGAGCCGUUUUGUAUGAAGACCUCUUCUUUGACGGGGCUUUUUUGCCUUUGAUUGAUUGAUUGCCCCCAUCGAGGCGAUAAGUUAUCGAUUAGCAUUCUCU ....(((((((((......((((....))))...)))))(((......))).(((((((((..((((((........)))))).....)))))))))....)))) (-28.70 = -28.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:33 2006