Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,113,365 – 19,113,459 |
Length | 94 |
Max. P | 0.967044 |
Location | 19,113,365 – 19,113,459 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 95.49 |
Mean single sequence MFE | -15.10 |
Consensus MFE | -15.10 |
Energy contribution | -15.10 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.06 |
Structure conservation index | 1.00 |
SVM decision value | 1.60 |
SVM RNA-class probability | 0.967044 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19113365 94 + 23771897 UUUACCA----UCACUUUACACUUUAAGCCCCAACUCCUUUGUUCGGCGCUGAAAGUCCUUCCAUUGUUUUUCUGAAUGAAUGACAUUUUAAUUAAUA .......----.........(((((.(((((.(((......))).)).))).)))))........((((.(((.....))).))))............ ( -15.10) >DroSec_CAF1 915 94 + 1 CCUACCA----UCACUUUACACUUUAAGCCCCAACUCCUUUGUUCGGCGCUGAAAGUCCUUCCAUUGUUUUUCUGAAUGAAUGACAUUUUAAUUAAUA .......----.........(((((.(((((.(((......))).)).))).)))))........((((.(((.....))).))))............ ( -15.10) >DroSim_CAF1 1827 94 + 1 CCUACCA----UCACUUUACACUUUAAGCCCCAACUCCUUUGUUCGGCGCUGAAAGUCCUUCCAUUGUUUUUCUGAAUGAAUGACAUUUUAAUUAAUA .......----.........(((((.(((((.(((......))).)).))).)))))........((((.(((.....))).))))............ ( -15.10) >DroYak_CAF1 1962 98 + 1 CGUCCCACUACCCACUUUACACUUUAAGCCCCAACUCCUUUGUUCGGCGCUGAAAGUCCUUCCAUUGUUUUUCUGAAUGAAUGACAUUUUAAUUAAUA ....................(((((.(((((.(((......))).)).))).)))))........((((.(((.....))).))))............ ( -15.10) >consensus CCUACCA____UCACUUUACACUUUAAGCCCCAACUCCUUUGUUCGGCGCUGAAAGUCCUUCCAUUGUUUUUCUGAAUGAAUGACAUUUUAAUUAAUA ....................(((((.(((((.(((......))).)).))).)))))........((((.(((.....))).))))............ (-15.10 = -15.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:32 2006