| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,110,724 – 19,110,844 |
| Length | 120 |
| Max. P | 0.961890 |
| Location | 19,110,724 – 19,110,844 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.10 |
| Mean single sequence MFE | -42.77 |
| Consensus MFE | -38.56 |
| Energy contribution | -38.73 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.90 |
| SVM decision value | 1.53 |
| SVM RNA-class probability | 0.961890 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19110724 120 + 23771897 GACUGCUGCUGCAGCAGCUGCUCCUUCCCCAGGAAGAUGAGUGGGGAGCGGCACGAGCAGCUGCACUCUUUUCCGCUUGCCUUUUCUCCUUGGGGAUUUUGGCAGUUUUUUGAAUUGCGU (.((((....)))))(((((((...((((((((.(((.....((.((((((...(((........)))....)))))).))...))).))))))))....)))))))............. ( -46.60) >DroVir_CAF1 15000 117 + 1 GAC---UGUUGCAUGAGCUGUUCCUUCCCCAGGACGAUCAGCGGCGAGCGGCACGAGCACGUGCACUCCUUUCCGUUUGCCUUUUCUCCUAGGGGAUUUUGGCAGUUUUUUGAAUUCUUG ...---.....((.((((((((...(((((((((.((.....(((((((((((((....))))).........))))))))...)))))).)))))....))))))))..))........ ( -40.40) >DroPse_CAF1 14081 117 + 1 GAC---UGCUGCAGGAGCUGCUCCUUCCCCAGGGAGAUUAGCGGCGACUGGCACGAGCACGCGCACUCUUUUCCGCUUGCCUUUUCCCCUUGGGGAUUUUGGCAGUUUUUUGAAUUCCUU (((---((((..(((((...)))))(((((((((.((.....(((((.(((...(((........)))....))).)))))...)).)))))))))....)))))))............. ( -41.90) >DroGri_CAF1 14244 117 + 1 GAC---UGCUGCAUUAGCUGCUCCUUCCCCAGGACGAUCAGCGGCGAACGGCACGAGCAGCUGCACUCCUUUCCGUUUGCCUUUUCUCCUAGGGAAUUUUGGCAGUUUUUUGAAUUCUUG (((---(((((((.....)))...(((((.((((.((.....(((((((((...(((........)))....)))))))))...)))))).)))))....)))))))............. ( -39.70) >DroAna_CAF1 1631 120 + 1 GACUGCUGCUGCAUGAGCUGCUCCUUCCCCAGGAAGAUGAGUGGGGAGCGGCACGAGCAACUGCACUCUUUUCCGCUUGCCUUUUCUCCUUGGGGAUUUUGGCAGUUUUUUGAAUUGCGU ....((.....((.((((((((...((((((((.(((.....((.((((((...(((........)))....)))))).))...))).))))))))....))))))))..))....)).. ( -46.10) >DroPer_CAF1 10184 117 + 1 GAC---UGCUGCAGGAGCUGCUCCUUCCCCAGGGAGAUUAGCGGCGACUGGCACGAGCACGCGCACUCUUUUCCGCUUGCCUUUUCCCCUUGGGGAUUUUGGCAGUUUUUUGAAUUCCUU (((---((((..(((((...)))))(((((((((.((.....(((((.(((...(((........)))....))).)))))...)).)))))))))....)))))))............. ( -41.90) >consensus GAC___UGCUGCAGGAGCUGCUCCUUCCCCAGGAAGAUCAGCGGCGAGCGGCACGAGCACCUGCACUCUUUUCCGCUUGCCUUUUCUCCUUGGGGAUUUUGGCAGUUUUUUGAAUUCCUU ..............((((((((...(((((((((.((.....(((((((((...(((........)))....)))))))))...)))))).)))))....))))))))............ (-38.56 = -38.73 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:29 2006