| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,106,918 – 19,107,010 |
| Length | 92 |
| Max. P | 0.995705 |
| Location | 19,106,918 – 19,107,010 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 72.10 |
| Mean single sequence MFE | -25.38 |
| Consensus MFE | -10.79 |
| Energy contribution | -11.02 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.76 |
| Structure conservation index | 0.43 |
| SVM decision value | 2.61 |
| SVM RNA-class probability | 0.995705 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19106918 92 - 23771897 UCUAAGAGAAAGU-UGAAU--CCCCGAAAGGG---CUUUUCGCA------UUUCUCCAACUUUAGUUGAAGGCGUACAUAGGAAACGCUUUUAUCU--AUGAAUAC .....((((((((-.(((.--.(((....)))---..))).)).------))))))......(((.(((((((((.........))))))))).))--)....... ( -27.10) >DroVir_CAF1 11306 100 - 1 U---GGCAAAUGUUUGAGGUGUCUGCAAAGAG---AUCUCAGCAUUUCGGCAUUUAAAAUUUUAGUUUGGGGCGUAAAUAGUUAACGCUUUUAUCAUAAUGAAUAA (---(.((((((((.(((((.(((....))).---)))))))))))).).))............(...(((((((.........)))))))...)........... ( -22.90) >DroGri_CAF1 10389 100 - 1 U------GAAUGUUCGAGGAAUCUGCAAGGAAUUAAUCCUGACAUUUGAGCAUUUAAAACUUUAGUUUUUGGCGUAAAUAGUAAACGCUUUUAUCAUAAUAAAUAU (------(((((((((((.....((..((((.....))))..))))))))))))))........(.....(((((.........))))).....)........... ( -18.60) >DroSim_CAF1 5788 92 - 1 UCUAAGAGAAAGU-UGAAU--CCCCGAAAGGG---UUUUUCGCA------UUUCUCCAACUUUAGUUGAAGGCGUACAUAGGAAACGCUUUUAUCU--AUGAAUAC .....((((((((-.(((.--.(((....)))---..))).)).------))))))......(((.(((((((((.........))))))))).))--)....... ( -28.10) >DroEre_CAF1 5226 91 - 1 UCUAAGAGAAAGU-UGAAU--ACCCGAAAGGG---UUUUU-GCA------UUUCUCCAACUUUAGUUGAAAGCGUACAUAGGAAACGCUUUUAUCU--AUGAAUAC .....((((((((-.(((.--((((....)))---)))).-)).------))))))......(((.(((((((((.........))))))))).))--)....... ( -27.50) >DroYak_CAF1 4906 92 - 1 UCUAAGAGAAAGU-UGAAU--CCCCGGAAGGG---UUUUUCGCA------UUUCUCCCACUUUAGUUGAAGGCGUACAUAGGAAACGCUUUUAUCU--AUGAAUAC .....((((((((-.(((.--.(((....)))---..))).)).------))))))......(((.(((((((((.........))))))))).))--)....... ( -28.10) >consensus UCUAAGAGAAAGU_UGAAU__CCCCGAAAGGG___UUUUUCGCA______UUUCUCCAACUUUAGUUGAAGGCGUACAUAGGAAACGCUUUUAUCU__AUGAAUAC ...........((.........(((....))).........)).....................(.(((((((((.........))))))))).)........... (-10.79 = -11.02 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:27 2006