| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,105,618 – 19,105,709 |
| Length | 91 |
| Max. P | 0.671950 |
| Location | 19,105,618 – 19,105,709 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 62.22 |
| Mean single sequence MFE | -21.30 |
| Consensus MFE | -10.95 |
| Energy contribution | -10.73 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.671950 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19105618 91 + 23771897 UUUUGUUUAUU----UUUAGGGAAA--UUUUAUA---------UGAUUAUCGGUACUCAGCCAAACUGAGUUGCCACCUUGCAGAAUAUCCAAAAAAGGUUUUGCC------ (((((..((((----(((((((.((--((.....---------.))))...(((((((((.....))))).)))).))))).))))))..)))))..((.....))------ ( -22.70) >DroSim_CAF1 3770 95 + 1 AUUUGUUUUUUUUCUUUUAAGGAAA--UUGUGUU---------CGAUUAUUGGUACUCAACCCAACUGAGUUGCCACCUUGCAGAAUAUUCACAAAAGGUUUUGUC------ .(((((.....((((..(((((.((--(((....---------)))))..(((((((((.......)))).)))))))))).)))).....)))))..........------ ( -19.30) >DroEre_CAF1 3815 101 + 1 UACU-UUUAUC----UUCAG-UAUAUAUUGCAUUGGUUUUCGGCGAAAAUAGGUACAC-----AACAGUGUUGCCACCUGGCAAAAUAUCCGAAAAGAGCUUUGCUCGGUGU ....-..((((----(((.(-.((((.((((...(((((((...))))...(((((((-----....))).)))))))..)))).))))).)))..((((...)))))))). ( -21.90) >consensus UUUUGUUUAUU____UUUAGGGAAA__UUGUAUU_________CGAUUAUAGGUACUCA_CC_AACUGAGUUGCCACCUUGCAGAAUAUCCAAAAAAGGUUUUGCC______ ...................................................((((((((.......)))).)))).....(((((((...........)))))))....... (-10.95 = -10.73 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:26 2006