Locus 705

Sequence ID 3L_DroMel_CAF1
Location 2,113,809 – 2,113,899
Length 90
Max. P 0.997329
window1079

overview

Window 9

Location 2,113,809 – 2,113,899
Length 90
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 96.67
Mean single sequence MFE -32.48
Consensus MFE -27.78
Energy contribution -28.02
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -2.77
Structure conservation index 0.86
SVM decision value 2.84
SVM RNA-class probability 0.997329
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2113809 90 - 23771897
UCAAACGUCAAUGCCUUGAACGCCGCUCGACUGCUCACGAGAAUAUUGAUGAGUUUUUAGUGGUCGACGGGGUUGUGAGGAUGAUGAUUU-
.....(((((...((((((((.(((.(((((..((...((((((........))))))))..)))))))).))).))))).)))))....- ( -31.50)
>DroSec_CAF1 165233 89 - 1
UCAAACGUCAAUGCCUUGAACGCCGCUCGACUGCUCCCGACAAUAUUGAUGAGUUUUUAGUGGUCGACGGGGUUG-GAGGAUGAUGAUUC-
.....(((((...((((.(((.(((.(((((..((...(((...........)))...))..)))))))).))).-)))).)))))....- ( -33.50)
>DroSim_CAF1 167470 89 - 1
UCAAACGUCAAUGCCUUGAACGCCGCUCGACUGCUCCCGAGAAUAUUGAUGAGUUUUUAGUGGUCGACGGGGUUG-GAGGAUGGUGAUUC-
......((((...((((.(((.(((.(((((..((...((((((........))))))))..)))))))).))).-))))....))))..- ( -32.70)
>DroEre_CAF1 170544 90 - 1
UCAAACGUCAAUGCCUUGAACGCCGCUCGACUGCUCCCGAGAAUAUUGAUGAGUUUUUAGUGGUCGACAGGGUUG-GAGGAUGAUGAUUCU
.....(((((...((((.(((.((..(((((..((...((((((........))))))))..)))))..))))).-)))).)))))..... ( -30.00)
>DroYak_CAF1 163534 90 - 1
UCAAACGUCAAUGCCUUGAACGCCGCUCGACUGCUCCCGAGAAUAUUGAUGAGUUUUUAGUGGUCGACGGGGUUG-GAGGAUGAUGAUUCU
.....(((((...((((.(((.(((.(((((..((...((((((........))))))))..)))))))).))).-)))).)))))..... ( -34.70)
>consensus
UCAAACGUCAAUGCCUUGAACGCCGCUCGACUGCUCCCGAGAAUAUUGAUGAGUUUUUAGUGGUCGACGGGGUUG_GAGGAUGAUGAUUC_
.....(((((...((((..((.(((.(((((..((...((((((........))))))))..)))))))).))...)))).)))))..... (-27.78 = -28.02 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:00 2006