Locus 7049

Sequence ID 3L_DroMel_CAF1
Location 19,103,603 – 19,103,705
Length 102
Max. P 0.872382
window11432

overview

Window 2

Location 19,103,603 – 19,103,705
Length 102
Sequences 3
Columns 102
Reading direction forward
Mean pairwise identity 72.07
Mean single sequence MFE -15.50
Consensus MFE -11.12
Energy contribution -10.35
Covariance contribution -0.77
Combinations/Pair 1.19
Mean z-score -1.30
Structure conservation index 0.72
SVM decision value 0.88
SVM RNA-class probability 0.872382
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19103603 102 + 23771897
CAAGUGAAGCGAAUUUAAAGUAAUUGAAUUCAGUUGCAUGCUGCAUUUCCUUCCGCUUCUGACUAAUUUCUCCCAUCGAAUGUGCUUUAGUAUUCCCUUUAA
..((((((((((((((((.....))))))))...(((.....))).........)))))..))).............(((((........)))))....... ( -16.20)
>DroSec_CAF1 21238 83 + 1
CAAGUGAAGCGAAUUUAAAUAAAUAGAAAU-------------------CUUCCGCUUCUGACUAAUUUCUCCCAAGGAAUGUUCUUUAGCAUUCCCUUUAA
..(((((((((...................-------------------....))))))..)))............(((((((......)))))))...... ( -15.30)
>DroYak_CAF1 21390 85 + 1
CUAGUAAAGCUAAUUUAAAUUAACAAGAUUCAA-----------------CUCGGCUUUUAACUAAUUUUUCCCAAGGAAUGUGCUGUAGCAUUCCCUUUAA
.(((((((((..(.((.((((.....)))).))-----------------.)..)))))..))))...........(((((((......)))))))...... ( -15.00)
>consensus
CAAGUGAAGCGAAUUUAAAUUAAUAGAAUUCA_________________CUUCCGCUUCUGACUAAUUUCUCCCAAGGAAUGUGCUUUAGCAUUCCCUUUAA
..(((((((((..........................................))))))..)))............(((((((......)))))))...... (-11.12 = -10.35 +  -0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:25 2006